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- nd-rolling · 15 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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670821295 | https://github.com/pydata/xarray/pull/4219#issuecomment-670821295 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY3MDgyMTI5NQ== | fujiisoup 6815844 | 2020-08-08T04:18:08Z | 2020-08-08T04:18:08Z | MEMBER | @max-sixty thanks for the review. merged |
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670819822 | https://github.com/pydata/xarray/pull/4219#issuecomment-670819822 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY3MDgxOTgyMg== | max-sixty 5635139 | 2020-08-08T04:02:09Z | 2020-08-08T04:02:09Z | MEMBER | Great! Thanks @fujiisoup ! Ready to go from my POV |
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670705764 | https://github.com/pydata/xarray/pull/4219#issuecomment-670705764 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY3MDcwNTc2NA== | fujiisoup 6815844 | 2020-08-07T20:45:01Z | 2020-08-07T20:45:01Z | MEMBER | Thanks @max-sixty . You are completely correct. As the test pass, I was fooling myself. The reason was that the dataset I was using for the test does not have Fixed. Now it correctly fails for |
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670625085 | https://github.com/pydata/xarray/pull/4219#issuecomment-670625085 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY3MDYyNTA4NQ== | dcherian 2448579 | 2020-08-07T17:26:06Z | 2020-08-07T17:26:06Z | MEMBER | I think it's more like
but that gives
|
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670594286 | https://github.com/pydata/xarray/pull/4219#issuecomment-670594286 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY3MDU5NDI4Ng== | max-sixty 5635139 | 2020-08-07T16:13:28Z | 2020-08-07T16:13:28Z | MEMBER | I'm still a bit confused. How does the "roll over each dimension in turn" approach equal the "roll over both dimension together" approach with a function like std? Here's a proposed counter example: ```python import xarray as xr import numpy as np da = xr.DataArray(np.asarray([[0,10,0],[0,10,0], [0,10,0]]), dims=list('xy')) print(da) <xarray.DataArray (x: 3, y: 3)> array([[ 0, 10, 0], [ 0, 10, 0], [ 0, 10, 0]]) Dimensions without coordinates: x, y x_std = da.rolling(dict(x=2)).std() print(x_std) <xarray.DataArray (x: 3, y: 3)> array([[nan, nan, nan], [ 0., 0., 0.], [ 0., 0., 0.]]) Dimensions without coordinates: x, y x_then_y_std = x_std.rolling(dict(y=2)).std() print(x_then_y_std) <xarray.DataArray (x: 3, y: 3)> array([[nan, nan, nan], [nan, 0., 0.], [nan, 0., 0.]]) Dimensions without coordinates: x, y combined_std = da.rolling(dict(x=2, y=2)).std() print(combined_std) <xarray.DataArray (x: 3, y: 3)> array([[nan, nan, nan], [nan, 5., 5.], [nan, 5., 5.]]) Dimensions without coordinates: x, y ``` |
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667411555 | https://github.com/pydata/xarray/pull/4219#issuecomment-667411555 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY2NzQxMTU1NQ== | fujiisoup 6815844 | 2020-07-31T22:25:25Z | 2020-07-31T22:25:25Z | MEMBER | Thanks @max-sixty for the review ;) I'll work for the update in a few days. |
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666841275 | https://github.com/pydata/xarray/pull/4219#issuecomment-666841275 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY2Njg0MTI3NQ== | fujiisoup 6815844 | 2020-07-31T00:42:23Z | 2020-07-31T00:42:23Z | MEMBER | Could anyone kindly review this? |
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658403527 | https://github.com/pydata/xarray/pull/4219#issuecomment-658403527 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY1ODQwMzUyNw== | fujiisoup 6815844 | 2020-07-14T20:44:12Z | 2020-07-14T20:44:12Z | MEMBER | I got an error for typechecking, only in CI but not in local, from the code that I didn't change. |
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657902895 | https://github.com/pydata/xarray/pull/4219#issuecomment-657902895 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY1NzkwMjg5NQ== | fujiisoup 6815844 | 2020-07-14T00:49:38Z | 2020-07-14T00:49:38Z | MEMBER | A possible improvement will be nan-reduction methods for nd-rolling. Currently, we just use numpy nan-reductions, which is memory consuming for strided arrays. This issue can be solved by replacing nan by appropriate values and applying nonnan-reduction methods,
e.g.,
I'd like to leave this improvement to future PR. |
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657897529 | https://github.com/pydata/xarray/pull/4219#issuecomment-657897529 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY1Nzg5NzUyOQ== | fujiisoup 6815844 | 2020-07-14T00:27:51Z | 2020-07-14T00:27:51Z | MEMBER | I think now it is ready for review, though I'm sure tests miss a lot of edge cases. Maybe we can fix them if pointed out. |
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657614995 | https://github.com/pydata/xarray/pull/4219#issuecomment-657614995 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY1NzYxNDk5NQ== | dcherian 2448579 | 2020-07-13T15:05:26Z | 2020-07-13T15:05:26Z | MEMBER | I think the dictionary is OK. We can allow scalars for scalar for |
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657270068 | https://github.com/pydata/xarray/pull/4219#issuecomment-657270068 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY1NzI3MDA2OA== | fujiisoup 6815844 | 2020-07-12T20:18:28Z | 2020-07-12T20:18:28Z | MEMBER | Another API concern. We now use With nd-dimension, I think Even if we leave it, we may disallow nd-argument of |
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657269189 | https://github.com/pydata/xarray/pull/4219#issuecomment-657269189 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY1NzI2OTE4OQ== | fujiisoup 6815844 | 2020-07-12T20:09:34Z | 2020-07-12T20:09:34Z | MEMBER | Hi @max-sixty
I couldn't think of it until just now. But yes, it sounds to me like a repeated rolling operation.
No. With nd-rolling, we need to use numpy reductions.
Its |
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657257847 | https://github.com/pydata/xarray/pull/4219#issuecomment-657257847 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY1NzI1Nzg0Nw== | max-sixty 5635139 | 2020-07-12T18:23:19Z | 2020-07-12T18:23:28Z | MEMBER | Re the API, I think the dict is probably the best option, although it does complicate as the arguments become differently typed depending on one vs multiple dimensions. One alternative is to allow fluent args, like:
|
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657257600 | https://github.com/pydata/xarray/pull/4219#issuecomment-657257600 | https://api.github.com/repos/pydata/xarray/issues/4219 | MDEyOklzc3VlQ29tbWVudDY1NzI1NzYwMA== | max-sixty 5635139 | 2020-07-12T18:20:38Z | 2020-07-12T18:20:38Z | MEMBER | This looks very promising; I'm surprised it was possible without more code. I'm being slow, but where is the nd-rolling algo? I had thought bottleneck didn't support more than one dimension? https://bottleneck.readthedocs.io/en/latest/bottleneck.move.html, and that we'd have to implement our own in numbagg (which would be very possible) |
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