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- fix to_netcdf append bug (GH1215) · 10 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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339216097 | https://github.com/pydata/xarray/pull/1609#issuecomment-339216097 | https://api.github.com/repos/pydata/xarray/issues/1609 | MDEyOklzc3VlQ29tbWVudDMzOTIxNjA5Nw== | shoyer 1217238 | 2017-10-25T05:09:01Z | 2017-10-25T05:09:01Z | MEMBER | @jhamman This looks great, thank you! |
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fix to_netcdf append bug (GH1215) 262930380 | |
339198772 | https://github.com/pydata/xarray/pull/1609#issuecomment-339198772 | https://api.github.com/repos/pydata/xarray/issues/1609 | MDEyOklzc3VlQ29tbWVudDMzOTE5ODc3Mg== | jhamman 2443309 | 2017-10-25T02:56:55Z | 2017-10-25T02:56:55Z | MEMBER | @shoyer - take another look. I have basically merged our two ideas and refactored the roundtrip tests. Tests are still failing but not for py2.7, on appveyor, or py3.6 locally. |
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fix to_netcdf append bug (GH1215) 262930380 | |
339005604 | https://github.com/pydata/xarray/pull/1609#issuecomment-339005604 | https://api.github.com/repos/pydata/xarray/issues/1609 | MDEyOklzc3VlQ29tbWVudDMzOTAwNTYwNA== | jhamman 2443309 | 2017-10-24T14:17:27Z | 2017-10-24T14:17:27Z | MEMBER | @shoyer - ready for final review. |
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fix to_netcdf append bug (GH1215) 262930380 | |
338367037 | https://github.com/pydata/xarray/pull/1609#issuecomment-338367037 | https://api.github.com/repos/pydata/xarray/issues/1609 | MDEyOklzc3VlQ29tbWVudDMzODM2NzAzNw== | shoyer 1217238 | 2017-10-21T06:06:16Z | 2017-10-21T06:06:16Z | MEMBER | @jhamman I think this is something to do with string/bytes. The data gets written as Unicode strings but then read back in as bytes, which is obviously not ideal. If you want to ignore this, like the current tests, you can use |
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fix to_netcdf append bug (GH1215) 262930380 | |
338363428 | https://github.com/pydata/xarray/pull/1609#issuecomment-338363428 | https://api.github.com/repos/pydata/xarray/issues/1609 | MDEyOklzc3VlQ29tbWVudDMzODM2MzQyOA== | jhamman 2443309 | 2017-10-21T04:35:55Z | 2017-10-21T04:35:55Z | MEMBER | Question for those who are familiar with the |
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fix to_netcdf append bug (GH1215) 262930380 | |
337930499 | https://github.com/pydata/xarray/pull/1609#issuecomment-337930499 | https://api.github.com/repos/pydata/xarray/issues/1609 | MDEyOklzc3VlQ29tbWVudDMzNzkzMDQ5OQ== | fmaussion 10050469 | 2017-10-19T14:43:48Z | 2017-10-19T14:43:48Z | MEMBER | Thanks! I like it: simple and in accordance with netcdf4's silent overwriting. It would be cool to describe this behavior this in the documentation somewhere, and add a test that the data is correctly overwritten maybe? |
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fix to_netcdf append bug (GH1215) 262930380 | |
337754946 | https://github.com/pydata/xarray/pull/1609#issuecomment-337754946 | https://api.github.com/repos/pydata/xarray/issues/1609 | MDEyOklzc3VlQ29tbWVudDMzNzc1NDk0Ng== | jhamman 2443309 | 2017-10-18T23:17:48Z | 2017-10-18T23:17:48Z | MEMBER | @fmaussion - I've updated the append logic slightly. I'm wondering what you think? This version more aggressively overwrites existing variables (data_vars and coords). |
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fix to_netcdf append bug (GH1215) 262930380 | |
335711382 | https://github.com/pydata/xarray/pull/1609#issuecomment-335711382 | https://api.github.com/repos/pydata/xarray/issues/1609 | MDEyOklzc3VlQ29tbWVudDMzNTcxMTM4Mg== | fmaussion 10050469 | 2017-10-11T07:31:53Z | 2017-10-11T07:31:53Z | MEMBER | Netcdf4 would overwrite in this situation, and I am also in favor of overwriting as this could be quite a useful usecase:
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fix to_netcdf append bug (GH1215) 262930380 | |
335518624 | https://github.com/pydata/xarray/pull/1609#issuecomment-335518624 | https://api.github.com/repos/pydata/xarray/issues/1609 | MDEyOklzc3VlQ29tbWVudDMzNTUxODYyNA== | jhamman 2443309 | 2017-10-10T15:50:09Z | 2017-10-10T15:50:09Z | MEMBER | @fmaussion - you bring up a good point. There are two scenarios here. 1) appending to a file with existing data variables 2) appending to a file with existing coordinate variables I'm wondering if we should disallow 1, in favor of being more explicit. So: ```Python list_of_vars_to_append = ['var1', 'var2'] ds[list_of_vars_to_append].to_netcdf(filename, mode='a') if either var1 or var2 are in filename, raise an error?
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fix to_netcdf append bug (GH1215) 262930380 | |
335411346 | https://github.com/pydata/xarray/pull/1609#issuecomment-335411346 | https://api.github.com/repos/pydata/xarray/issues/1609 | MDEyOklzc3VlQ29tbWVudDMzNTQxMTM0Ng== | fmaussion 10050469 | 2017-10-10T09:12:57Z | 2017-10-10T09:12:57Z | MEMBER | Thanks @jhamman ! With this fix existing variables will silently be ignored and won't be written, right? Maybe the expected behaviour (or specs) of the "append" option should be written somewhere in the docs and tested to avoid future regressions like we had in https://github.com/pydata/xarray/issues/1215 |
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fix to_netcdf append bug (GH1215) 262930380 |
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