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- enable internal plotting with cftime datetime · 16 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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461631993 | https://github.com/pydata/xarray/pull/2665#issuecomment-461631993 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ2MTYzMTk5Mw== | jbusecke 14314623 | 2019-02-07T23:18:24Z | 2019-02-07T23:18:24Z | CONTRIBUTOR | Is there anything else that I need to do at this point? Sorry for the xarray noob question... |
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enable internal plotting with cftime datetime 398041758 | |
461414910 | https://github.com/pydata/xarray/pull/2665#issuecomment-461414910 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ2MTQxNDkxMA== | jbusecke 14314623 | 2019-02-07T13:18:07Z | 2019-02-07T13:18:07Z | CONTRIBUTOR | Awesome. Just added the line. Let me know if you think it is appropriate. |
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enable internal plotting with cftime datetime 398041758 | |
461066722 | https://github.com/pydata/xarray/pull/2665#issuecomment-461066722 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ2MTA2NjcyMg== | jbusecke 14314623 | 2019-02-06T15:33:36Z | 2019-02-06T15:33:36Z | CONTRIBUTOR | Thanks. I updated the PR accordingly. |
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enable internal plotting with cftime datetime 398041758 | |
460902688 | https://github.com/pydata/xarray/pull/2665#issuecomment-460902688 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ2MDkwMjY4OA== | jbusecke 14314623 | 2019-02-06T05:08:09Z | 2019-02-06T05:08:09Z | CONTRIBUTOR | Seems like the travis builds all pass, wohoo. Please let me know if anything else is needed. |
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enable internal plotting with cftime datetime 398041758 | |
460803180 | https://github.com/pydata/xarray/pull/2665#issuecomment-460803180 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ2MDgwMzE4MA== | jbusecke 14314623 | 2019-02-05T21:05:17Z | 2019-02-05T21:05:17Z | CONTRIBUTOR | I think I have addressed all the above remarks (Many thanks for the thorough review and tips). Waiting for the CI again. |
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enable internal plotting with cftime datetime 398041758 | |
460777924 | https://github.com/pydata/xarray/pull/2665#issuecomment-460777924 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ2MDc3NzkyNA== | jbusecke 14314623 | 2019-02-05T19:47:56Z | 2019-02-05T19:47:56Z | CONTRIBUTOR | I am smh getting these errors in the backend part of the tests: ``` ======================================================== FAILURES ========================================================= _____ TestNetCDF3ViaNetCDF4Data.test_encoding_same_dtype ______ self = <xarray.tests.test_backends.TestNetCDF3ViaNetCDF4Data object at 0xd238d9a20>
xarray/tests/test_backends.py:853: AssertionError _______ TestGenericNetCDFData.test_encoding_same_dtype ________ self = <xarray.tests.test_backends.TestGenericNetCDFData object at 0xd238e0588>
xarray/tests/test_backends.py:853: AssertionError ``` They do not always show up...not sure what to make of it, but could be an issue with my local environment. Lets see if the CI shows this aswell. |
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enable internal plotting with cftime datetime 398041758 | |
460744700 | https://github.com/pydata/xarray/pull/2665#issuecomment-460744700 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ2MDc0NDcwMA== | jbusecke 14314623 | 2019-02-05T18:14:42Z | 2019-02-05T18:14:42Z | CONTRIBUTOR | Ok I think I have most of the things covered. All test pass for me locally. What should I add to the |
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enable internal plotting with cftime datetime 398041758 | |
457785427 | https://github.com/pydata/xarray/pull/2665#issuecomment-457785427 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ1Nzc4NTQyNw== | jbusecke 14314623 | 2019-01-26T01:02:47Z | 2019-01-26T01:03:13Z | CONTRIBUTOR | Great idea to simplify @spencerkclark. Thanks. Regarding the tests. I have removed the following: ``` @requires_cftime def test_plot_cftime_coordinate_error(): cftime = _import_cftime() time = cftime.num2date(np.arange(5), units='days since 0001-01-01', calendar='noleap') data = DataArray(np.arange(5), coords=[time], dims=['time']) with raises_regex(TypeError, 'requires coordinates to be numeric or dates'): data.plot() @requires_cftime def test_plot_cftime_data_error(): cftime = _import_cftime() data = cftime.num2date(np.arange(5), units='days since 0001-01-01', calendar='noleap') data = DataArray(data, coords=[np.arange(5)], dims=['x']) with raises_regex(NotImplementedError, 'cftime.datetime'): data.plot() ``` And the test suite passes locally. But I assume Ill have to add another test dataset with a cftime.datetime time-axis, which then gets dragged through all the plotting tests? Where would I have to put that in? Many thanks for all the help |
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enable internal plotting with cftime datetime 398041758 | |
457768114 | https://github.com/pydata/xarray/pull/2665#issuecomment-457768114 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ1Nzc2ODExNA== | jbusecke 14314623 | 2019-01-25T23:18:16Z | 2019-01-25T23:21:13Z | CONTRIBUTOR | I have quickly looked into the testing and found an oddity that might be important if nc-time-axis is not installed. So in the definition of
|
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enable internal plotting with cftime datetime 398041758 | |
457766633 | https://github.com/pydata/xarray/pull/2665#issuecomment-457766633 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ1Nzc2NjYzMw== | jbusecke 14314623 | 2019-01-25T23:10:48Z | 2019-01-25T23:10:48Z | CONTRIBUTOR | Ok so the plotting works now with both timeseries and 2d data as follows ``` import xarray as xr import numpy as np %matplotlib inline Create a simple line dataarray with cftimetime = xr.cftime_range(start='2000', periods=4, freq='1H', calendar='noleap')
data = np.random.rand(len(time))
da = xr.DataArray(data, coords=[('time', time)])
da.plot()
Check with 2d datatime = xr.cftime_range(start='2000', periods=6, freq='2MS', calendar='noleap')
data2 = np.random.rand(len(time), 4)
da2 = xr.DataArray(data2, coords=[('time', time), ('other', range(4))])
da2.plot()
```
|
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enable internal plotting with cftime datetime 398041758 | |
457723510 | https://github.com/pydata/xarray/pull/2665#issuecomment-457723510 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ1NzcyMzUxMA== | jbusecke 14314623 | 2019-01-25T20:51:30Z | 2019-01-25T20:51:30Z | CONTRIBUTOR | Cool. Ill give it a shot right now. |
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enable internal plotting with cftime datetime 398041758 | |
457196788 | https://github.com/pydata/xarray/pull/2665#issuecomment-457196788 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ1NzE5Njc4OA== | jbusecke 14314623 | 2019-01-24T13:30:24Z | 2019-01-24T13:30:24Z | CONTRIBUTOR | Sounds good to me. Best Julius On Jan 23, 2019, 12:56 PM -0500, Spencer Clark notifications@github.com, wrote:
|
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enable internal plotting with cftime datetime 398041758 | |
456883187 | https://github.com/pydata/xarray/pull/2665#issuecomment-456883187 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ1Njg4MzE4Nw== | jbusecke 14314623 | 2019-01-23T17:02:14Z | 2019-01-23T17:02:14Z | CONTRIBUTOR | Is there still interest in this PR? Or did the upstream changes move ahead? I am finding myself explaining workarounds for this too students in the department, so maybe my time would be better invested getting this fix to the full community? But obviously if things are going to be fixed upstream soon, I would devote time to other projects. Thoughts? |
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enable internal plotting with cftime datetime 398041758 | |
453298775 | https://github.com/pydata/xarray/pull/2665#issuecomment-453298775 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ1MzI5ODc3NQ== | jbusecke 14314623 | 2019-01-10T23:24:52Z | 2019-01-10T23:24:52Z | CONTRIBUTOR | Oh shoot, I now remember seeing this. If this will be implemented soon I guess the PR can be discarded. Any chance you would have a quick solution for the pcolormesh plot error (second example in the PR) @spencerkclark? |
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enable internal plotting with cftime datetime 398041758 | |
453282855 | https://github.com/pydata/xarray/pull/2665#issuecomment-453282855 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ1MzI4Mjg1NQ== | jbusecke 14314623 | 2019-01-10T22:38:47Z | 2019-01-10T22:38:47Z | CONTRIBUTOR | One of the more general questions I had was if we should expose the conversion using |
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enable internal plotting with cftime datetime 398041758 | |
453280699 | https://github.com/pydata/xarray/pull/2665#issuecomment-453280699 | https://api.github.com/repos/pydata/xarray/issues/2665 | MDEyOklzc3VlQ29tbWVudDQ1MzI4MDY5OQ== | jbusecke 14314623 | 2019-01-10T22:31:48Z | 2019-01-10T22:32:16Z | CONTRIBUTOR | I have been along the lines of a short example. This works for timeseries data. ``` import xarray as xr import numpy as np %matplotlib inline Create a simple line dataarray with cftimetime = xr.cftime_range(start='2000', periods=6, freq='2MS', calendar='noleap')
data = np.random.rand(len(time))
da = xr.DataArray(data, coords=[('time', time)])
da.plot()
```
For pcolormesh plots this still fails. ``` Create a simple line dataarray with cftimetime = xr.cftime_range(start='2000', periods=6, freq='2MS', calendar='noleap') data2 = np.random.rand(len(time), 4) da2 = xr.DataArray(data2, coords=[('time', time), ('other', range(4))]) da2.plot() ```
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-2-645c66b57bde> in <module>
3 data2 = np.random.rand(len(time), 4)
4 da2 = xr.DataArray(data2, coords=[('time', time), ('other', range(4))])
----> 5 da2.plot()
~/Work/CODE/PYTHON/xarray/xarray/plot/plot.py in __call__(self, **kwargs)
585
586 def __call__(self, **kwargs):
--> 587 return plot(self._da, **kwargs)
588
589 @functools.wraps(hist)
~/Work/CODE/PYTHON/xarray/xarray/plot/plot.py in plot(darray, row, col, col_wrap, ax, hue, rtol, subplot_kws, **kwargs)
220 kwargs['ax'] = ax
221
--> 222 return plotfunc(darray, **kwargs)
223
224
~/Work/CODE/PYTHON/xarray/xarray/plot/plot.py in newplotfunc(darray, x, y, figsize, size, aspect, ax, row, col, col_wrap, xincrease, yincrease, add_colorbar, add_labels, vmin, vmax, cmap, center, robust, extend, levels, infer_intervals, colors, subplot_kws, cbar_ax, cbar_kwargs, xscale, yscale, xticks, yticks, xlim, ylim, norm, **kwargs)
887 vmax=cmap_params['vmax'],
888 norm=cmap_params['norm'],
--> 889 **kwargs)
890
891 # Label the plot with metadata
~/Work/CODE/PYTHON/xarray/xarray/plot/plot.py in pcolormesh(x, y, z, ax, infer_intervals, **kwargs)
1135 (np.shape(y)[0] == np.shape(z)[0])):
1136 if len(y.shape) == 1:
-> 1137 y = _infer_interval_breaks(y, check_monotonic=True)
1138 else:
1139 # we have to infer the intervals on both axes
~/Work/CODE/PYTHON/xarray/xarray/plot/plot.py in _infer_interval_breaks(coord, axis, check_monotonic)
1085 coord = np.asarray(coord)
1086
-> 1087 if check_monotonic and not _is_monotonic(coord, axis=axis):
1088 raise ValueError("The input coordinate is not sorted in increasing "
1089 "order along axis %d. This can lead to unexpected "
~/Work/CODE/PYTHON/xarray/xarray/plot/plot.py in _is_monotonic(coord, axis)
1069 n = coord.shape[axis]
1070 delta_pos = (coord.take(np.arange(1, n), axis=axis) >=
-> 1071 coord.take(np.arange(0, n - 1), axis=axis))
1072 delta_neg = (coord.take(np.arange(1, n), axis=axis) <=
1073 coord.take(np.arange(0, n - 1), axis=axis))
TypeError: '>=' not supported between instances of 'CalendarDateTime' and 'CalendarDateTime'
Perhaps @spencerkclark has an idea how to deal with differencing cftime.datetime objects? |
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