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id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
1579956621 I_kwDOAMm_X85eLDmN 7519 Selecting variables from Dataset with view on dict keys is of type DataArray derhintze 25172489 closed 0     7 2023-02-10T16:02:19Z 2024-04-28T21:01:28Z 2024-04-28T21:01:27Z NONE      

What happened?

When selecting variables from a Dataset using a view on dict keys, the type returned is a DataArray, whereas the same using a list is a Dataset.

What did you expect to happen?

The type returned should be a Dataset.

Minimal Complete Verifiable Example

```Python import xarray as xr

d = {"a": ("dim", range(1, 4)), "b": ("dim", range(2, 5))}

data = xr.Dataset(d) select_dict = data[d.keys()] select_list = data[list(d)]

reveal_type(select_dict) reveal_type(select_list) ```

MVCE confirmation

  • [X] Minimal example — the example is as focused as reasonably possible to demonstrate the underlying issue in xarray.
  • [X] Complete example — the example is self-contained, including all data and the text of any traceback.
  • [x] Verifiable example — the example copy & pastes into an IPython prompt or Binder notebook, returning the result.
  • [X] New issue — a search of GitHub Issues suggests this is not a duplicate.

Relevant log output

Python $ mypy test.py test.py:9: note: Revealed type is "xarray.core.dataarray.DataArray" test.py:10: note: Revealed type is "xarray.core.dataset.Dataset" Success: no issues found in 1 source file

Anything else we need to know?

No response

Environment

INSTALLED VERSIONS ------------------ commit: None python: 3.9.10 (main, Mar 15 2022, 15:56:56) [GCC 7.5.0] python-bits: 64 OS: Linux OS-release: 3.10.0-1160.49.1.el7.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: 1.12.2 libnetcdf: 4.9.0 xarray: 2022.12.0 pandas: 1.5.2 numpy: 1.23.5 scipy: 1.10.0 netCDF4: 1.6.2 pydap: None h5netcdf: None h5py: None Nio: None zarr: None cftime: 1.6.2 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: None distributed: None matplotlib: 3.6.3 cartopy: None seaborn: None numbagg: None fsspec: None cupy: None pint: None sparse: None flox: None numpy_groupies: None setuptools: 58.1.0 pip: 23.0 conda: None pytest: 7.2.1 mypy: 0.991 IPython: 8.8.0 sphinx: None
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  completed xarray 13221727 issue
1461346911 I_kwDOAMm_X85XGmJf 7313 Using scatter with unfilled marker raises matplotlib UserWarning derhintze 25172489 closed 0     1 2022-11-23T09:17:17Z 2023-02-09T12:56:05Z 2023-02-09T12:56:05Z NONE      

What is your issue?

If plotting a scatter plot with an unfilled marker, matplotlib raises a UserWarning. Consider this MWE:

```python import warnings

import numpy as np import xarray as xr

warnings.filterwarnings("error")

ds = xr.Dataset({"a": ("dim", np.arange(3, 10))}, {"dim": np.arange(7)}) ds.plot.scatter(x="dim", y="a", marker="x") ```

Running this with matplotlib 3.6.2 yields:

Traceback (most recent call last): File "/my/path/test.py", line 9, in <module> ds.plot.scatter(x="dim", y="a", marker="x") File "/my/path/.venv/lib/python3.9/site-packages/xarray/plot/accessor.py", line 1071, in scatter return dataset_plot.scatter(self._ds, *args, **kwargs) File "/my/path/.venv/lib/python3.9/site-packages/xarray/plot/dataset_plot.py", line 916, in scatter return da.plot.scatter(*locals_.pop("args", ()), **locals_) File "/my/path/.venv/lib/python3.9/site-packages/xarray/plot/accessor.py", line 305, in scatter return dataarray_plot.scatter(self._da, *args, **kwargs) File "/my/path/.venv/lib/python3.9/site-packages/xarray/plot/dataarray_plot.py", line 1002, in newplotfunc primitive = plotfunc( File "/my/path/.venv/lib/python3.9/site-packages/xarray/plot/dataarray_plot.py", line 1277, in scatter primitive = ax.scatter(*[p.to_numpy().ravel() for p in plts], **kwargs) File "/my/path/.venv/lib/python3.9/site-packages/matplotlib/__init__.py", line 1423, in inner return func(ax, *map(sanitize_sequence, args), **kwargs) File "/my/path/.venv/lib/python3.9/site-packages/matplotlib/axes/_axes.py", line 4571, in scatter _api.warn_external( File "/my/path/.venv/lib/python3.9/site-packages/matplotlib/_api/__init__.py", line 363, in warn_external warnings.warn(message, category, stacklevel) UserWarning: You passed a edgecolor/edgecolors ('w') for an unfilled marker ('x'). Matplotlib is ignoring the edgecolor in favor of the facecolor. This behavior may change in the future.

Environment: ``` INSTALLED VERSIONS


commit: None python: 3.9.10 (main, Mar 15 2022, 15:56:56) [GCC 7.5.0] python-bits: 64 OS: Linux OS-release: 3.10.0-1160.49.1.el7.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: 1.12.2 libnetcdf: 4.9.0

xarray: 2022.11.0 pandas: 1.5.1 numpy: 1.23.5 scipy: 1.9.3 netCDF4: 1.6.2 pydap: None h5netcdf: None h5py: None Nio: None zarr: None cftime: 1.6.2 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: None distributed: None matplotlib: 3.6.2 cartopy: None seaborn: None numbagg: None fsspec: None cupy: None pint: None sparse: None flox: None numpy_groupies: None setuptools: 65.6.0 pip: 22.3.1 conda: None pytest: 7.2.0 IPython: 8.6.0 sphinx: None

```

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  completed xarray 13221727 issue
1461231016 I_kwDOAMm_X85XGJ2o 7312 polyval doesn't bind the output type derhintze 25172489 closed 0     3 2022-11-23T07:55:45Z 2022-11-26T15:42:52Z 2022-11-26T15:42:52Z NONE      

What happened?

We recently updated our package requirements to current xarray, and while some typing things got better for us, xarray.polyval seems to not allow mypy to correctly infer its output type.

What did you expect to happen?

Output type should depend on the input types.

Minimal Complete Verifiable Example

```Python from future import annotations

import numpy as np import xarray as xr

coeffs = xr.DataArray([1, 1]) xvals = xr.DataArray(np.arange(10))

result = xr.polyval(xvals, coeffs=coeffs) reveal_type(result) ```

MVCE confirmation

  • [X] Minimal example — the example is as focused as reasonably possible to demonstrate the underlying issue in xarray.
  • [X] Complete example — the example is self-contained, including all data and the text of any traceback.
  • [ ] Verifiable example — the example copy & pastes into an IPython prompt or Binder notebook, returning the result.
  • [X] New issue — a search of GitHub Issues suggests this is not a duplicate.

Relevant log output

Python test.py:11: note: Revealed type is "Union[xarray.core.dataset.Dataset, xarray.core.dataarray.DataArray]"

Anything else we need to know?

No response

Environment

INSTALLED VERSIONS ------------------ commit: None python: 3.9.10 (main, Mar 15 2022, 15:56:56) [GCC 7.5.0] python-bits: 64 OS: Linux OS-release: 3.10.0-1160.49.1.el7.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: 1.12.2 libnetcdf: 4.9.0 xarray: 2022.11.0 pandas: 1.5.1 numpy: 1.23.5 scipy: 1.9.3 netCDF4: 1.6.2 pydap: None h5netcdf: None h5py: None Nio: None zarr: None cftime: 1.6.2 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: None distributed: None matplotlib: 3.6.2 cartopy: None seaborn: None numbagg: None fsspec: None cupy: None pint: None sparse: None flox: None numpy_groupies: None setuptools: 65.6.0 pip: 22.3.1 conda: None pytest: 7.2.0 IPython: 8.6.0 sphinx: None
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  completed xarray 13221727 issue
1405752975 I_kwDOAMm_X85TyhaP 7156 Plotting empty DataArray oddly raises ImportError derhintze 25172489 closed 0 headtr1ck 43316012   7 2022-10-12T08:00:13Z 2022-10-28T16:44:32Z 2022-10-28T16:44:32Z NONE      

What happened?

When calling the xarray.DataArray.plot() method on empty DataArrays raises an ImportError about a required, but missing, nc-time-axis package. This is at least confusing.

What did you expect to happen?

Either a more appropriate exception (to the effect of "don't try to plot nothing plz"). Or just get an empty plot returned.

Minimal Complete Verifiable Example

```Python

import xarray as xr xr.DataArray([]) <xarray.DataArray (dim_0: 0)> array([], dtype=float64) Dimensions without coordinates: dim_0 xr.DataArray([]).plot() Traceback (most recent call last): File "<stdin>", line 1, in <module> File "foo/env/lib/python3.9/site-packages/xarray/plot/plot.py", line 866, in call return plot(self._da, kwargs) File "foo/env/lib/python3.9/site-packages/xarray/plot/plot.py", line 332, in plot return plotfunc(darray, kwargs) File "foo/env/lib/python3.9/site-packages/xarray/plot/plot.py", line 438, in line _ensure_plottable(xplt_val, yplt_val) File "foo/env/lib/python3.9/site-packages/xarray/plot/utils.py", line 648, in _ensure_plottable raise ImportError( ImportError: Plotting of arrays of cftime.datetime objects or arrays indexed by cftime.datetime objects requires the optional nc-time-axis (v1.2.0 or later) package. ```

MVCE confirmation

  • [X] Minimal example — the example is as focused as reasonably possible to demonstrate the underlying issue in xarray.
  • [X] Complete example — the example is self-contained, including all data and the text of any traceback.
  • [ ] Verifiable example — the example copy & pastes into an IPython prompt or Binder notebook, returning the result.
  • [X] New issue — a search of GitHub Issues suggests this is not a duplicate.

Relevant log output

No response

Anything else we need to know?

No response

Environment

INSTALLED VERSIONS ------------------ commit: None python: 3.9.10 (main, Mar 15 2022, 15:56:56) [GCC 7.5.0] python-bits: 64 OS: Linux OS-release: 3.10.0-1160.49.1.el7.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: 1.12.0 libnetcdf: 4.7.4 xarray: 0.21.1 pandas: 1.4.0 numpy: 1.21.5 scipy: 1.8.1 netCDF4: 1.5.8 pydap: None h5netcdf: None h5py: None Nio: None zarr: None cftime: 1.5.2 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: None distributed: None matplotlib: 3.5.1 cartopy: None seaborn: None numbagg: None fsspec: None cupy: None pint: None sparse: None setuptools: 49.2.1 pip: 22.2.2 conda: None pytest: 7.1.2 IPython: 8.0.1 sphinx: None
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  completed xarray 13221727 issue
991144834 MDU6SXNzdWU5OTExNDQ4MzQ= 5779 Coordinates have wrong number of elements after a Dataset/DataArray is split by np.split() derhintze 25172489 open 0     4 2021-09-08T13:32:49Z 2021-09-13T04:34:02Z   NONE      

What happened:

Tried to split a DataArray containing coordinates using numpy. Surprisingly, coordinates along another dimension than the axis specified to numpy are split. The resulting DataArray is broken since now the number of elements in all coordinates are different from the corresponding dimensions.

What you expected to happen:

Coordinates along the correct dimension should be split.

Minimal Complete Verifiable Example:

```python

import xarray as xr import numpy as np testarr = xr.DataArray(np.zeros((4, 6)), coords={"dim_0": np.arange(4), "aux_0": ("dim_0", ["a", "b", "c", "d"]), "aux_1": ("dim_1", np.arange(6))}) np.split(testarr, 3, axis=1) [<xarray.DataArray (dim_0: 4, dim_1: 2)> /-- array of shape (4, 2), all zero --/ Coordinates: * dim_0 (dim_0) int64 0 1 aux_0 (dim_0) <U1 'a' 'b' aux_1 (dim_1) int64 0 1 2 3 4 5 Dimensions without coordinates: dim_1, <xarray.DataArray (dim_0: 4, dim_1: 2)> /-- array of shape (4, 2), all zero --/ Coordinates: * dim_0 (dim_0) int64 2 3 aux_0 (dim_0) <U1 'c' 'd' aux_1 (dim_1) int64 0 1 2 3 4 5 Dimensions without coordinates: dim_1, <xarray.DataArray (dim_0: 4, dim_1: 2)> /-- array of shape (4, 2), all zero --/ Coordinates: * dim_0 (dim_0) int64 aux_0 (dim_0) <U1 aux_1 (dim_1) int64 0 1 2 3 4 5 Dimensions without coordinates: dim_1] ```

Anything else we need to know?:

Yes I know there's probably a better way to achieve what I need using xarray, probably xarray.apply_ufunc() or sth. Still, the observed behavior is unexpected.

Environment:

Output of <tt>xr.show_versions()</tt> ```python >>> xr.show_versions() INSTALLED VERSIONS ------------------ commit: None python: 3.9.1 (default, Jan 13 2021, 15:21:08) [GCC 4.8.5 20150623 (Red Hat 4.8.5-44)] python-bits: 64 OS: Linux OS-release: 3.10.0-1160.6.1.el7.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: 1.12.0 libnetcdf: 4.7.4 xarray: 0.18.2 pandas: 1.2.5 numpy: 1.20.3 scipy: 1.6.3 netCDF4: 1.5.6 pydap: None h5netcdf: None h5py: 3.2.1 Nio: None zarr: None cftime: 1.5.0 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 2021.06.0 distributed: None matplotlib: 3.4.2 cartopy: None seaborn: None numbagg: None pint: None setuptools: 49.2.1 pip: 21.2.4 conda: None pytest: 6.2.4 IPython: 7.24.1 sphinx: None ```
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    xarray 13221727 issue

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