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id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
666880880 MDU6SXNzdWU2NjY4ODA4ODA= 4278 Skipna not working in DataArray.rolling.mean mark-boer 12862013 closed 0     5 2020-07-28T08:32:41Z 2022-09-06T10:39:02Z 2020-07-29T11:17:23Z CONTRIBUTOR      

What happened: I tried to calculate a rolling mean or median, ignoring nan's

Minimal Complete Verifiable Example:

```python

da = xr.DataArray([1.0, 2, 3, np.nan, 5, 6]) da.rolling(dim_0 = 3).mean(skipna=True) <xarray.DataArray (dim_0: 6)> array([nan, nan, 2., nan, nan, nan]) Dimensions without coordinates: dim_0 ```

I expected this array to have have no nans. There is a simple workaround that does give the answer I was looking for:

```python

da.rolling(dim_0 = 3).construct("new").mean("new", skipna=True) <xarray.DataArray (dim_0: 6)> array([1. , 1.5, 2. , 2.5, 4. , 5.5]) Dimensions without coordinates: dim_0 ```

Anything else we need to know?: Love the project ;-)

Environment:

Output of <tt>xr.show_versions()</tt> INSTALLED VERSIONS ------------------ commit: None python: 3.8.3 (default, May 16 2020, 07:08:28) [GCC 8.3.0] python-bits: 64 OS: Linux OS-release: 4.19.76-linuxkit machine: x86_64 processor: byteorder: little LC_ALL: None LANG: C.UTF-8 LOCALE: en_US.UTF-8 libhdf5: None libnetcdf: None xarray: 0.16.0 pandas: 1.0.5 numpy: 1.19.1 scipy: None netCDF4: None pydap: None h5netcdf: None h5py: None Nio: None zarr: None cftime: None nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: None distributed: None matplotlib: None cartopy: None seaborn: None numbagg: None pint: None setuptools: 46.4.0 pip: 20.1.1 conda: None pytest: None IPython: 7.16.1 sphinx: None
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  completed xarray 13221727 issue
532940062 MDExOlB1bGxSZXF1ZXN0MzQ5MDk3Mzgz 3596 Add DataArray.pad, Dataset.pad, Variable.pad mark-boer 12862013 closed 0     20 2019-12-04T21:18:41Z 2020-03-21T11:50:44Z 2020-03-19T14:41:50Z CONTRIBUTOR   0 pydata/xarray/pulls/3596

Hello all,

This is my first PR to a pydata project. This pull request is still very much a work in progress and I could really use your input on a couple of things.

  • [x] Closes #2605
  • [x] Tests added
  • [x] Passes black . && mypy . && flake8
  • [x] Fully documented, including whats-new.rst for all changes and api.rst for new API

  • I moved the custom dask pad method into dask_array_compat to ensure backwards compatability to Dask versions that do not have dask.pad yet. We could chose to drop this support if we wanted to.

  • I'm still in doubt about the function signature, numpy as dask use optional kwargs, but that kinda interferes with the **pad_width_kwargs. I chose the signature that I thought looked least awkward.
  • The default behaviour of pad with mode=constant pads with NaN's converting the array to float in the process. This goes against the default behaviour of numpy as dask.
  • How should the coordinates of a DataArray be padded? I chose default padding except for modes "edge", "reflect", "symmetric", "wrap".
  • How should we handle inconsistencies between numpy.pad and Dask.pad, it turns out there are a couple 5303

Dataset.pad is coming up.

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    xarray 13221727 pull
546791416 MDU6SXNzdWU1NDY3OTE0MTY= 3671 rolling.construct alignment mark-boer 12862013 closed 0     4 2020-01-08T11:03:28Z 2020-01-11T02:24:21Z 2020-01-11T02:24:21Z CONTRIBUTOR      

Hello xarray team

I was trying to implement functionality similar to Scikit Image's view_as_windows, but I was having a hard time with the boundary conditions. I understand this request is very similar to rolling with periodic boundary conditions #2007.

MCVE Code Sample

```python

arr = xr.DataArray(np.arange(4), dims=("x",)) arr.rolling(x=2).construct("roll_x", stride=2) <xarray.DataArray (x: 2, roll_x: 2)> array([[nan, 0.], [ 1., 2.]]) Dimensions without coordinates: x, roll_x ```

Expected Output

It would be nice to be able to easily get an output of: python <xarray.DataArray (x: 2, roll_x: 2)> array([[0., 1.], [2., 3.]]) Dimensions without coordinates: x, roll_x

Possible workarounds

With the upcoming features of pad (#3596) and rolling: periodic (#2011) it is actually not that hard to work around with:

```python arr.pad(x=(1,0)).rolling(x=2).construct("roll_x", stride=2).isel(x=slice(1,None))

or

arr.roll(x=-1).rolling(x=2, boundary="periodic").construct("roll_x", stride=2) ```

Idea

Would it be possible to add a keyword argument to either rolling() or construct() that expects an alignment of "left", "right" or "center". I understand that this could break interface copied from Pandas, but I hope it could be useful to others as well.

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  completed xarray 13221727 issue

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