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  • xarray 5
id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
423742774 MDU6SXNzdWU0MjM3NDI3NzQ= 2835 Dataset.copy(deep=True) does not deepcopy .attrs kefirbandi 1277781 closed 0     12 2019-03-21T13:58:03Z 2022-09-29T16:36:52Z 2022-09-29T16:36:52Z CONTRIBUTOR      

But it would be expected (at least by me) that it does.

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  completed xarray 13221727 issue
623131373 MDU6SXNzdWU2MjMxMzEzNzM= 4087 Bug in conversion frompd.series in 0.15.1 kefirbandi 1277781 closed 0     3 2020-05-22T11:04:11Z 2020-05-22T11:59:40Z 2020-05-22T11:29:46Z CONTRIBUTOR      

Bug in conversion frompd.series

MCVE Code Sample

```python import pandas as pd import xarray as xr

data3 = pd.DataFrame([(1, 2, 1), (2, 2, 1)],columns=['x', 'B', 'A']) data3 = data3.set_index(['x']) data3.rename_axis('tag', axis=1, inplace=True) data3 = data3.stack() print(data3) print(xr.DataArray.from_series(data3).sel(tag='B')) ```

Expected Output

[2,2]

Problem Description

The same code gives the expected output in xarray 0.14.1 Also works correctly if "tag" dimension is properly sorted during DataFrame cretion.

Versions

Output of <tt>xr.show_versions()</tt> INSTALLED VERSIONS ------------------ commit: None python: 3.6.7 | packaged by conda-forge | (default, Jul 2 2019, 02:18:42) [GCC 7.3.0] python-bits: 64 OS: Linux OS-release: 4.1.12-124.38.1.el7uek.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: en_US.utf8 LANG: en_US.utf8 LOCALE: en_US.UTF-8 libhdf5: 1.10.4 libnetcdf: 4.6.3 xarray: 0.15.1 pandas: 0.25.0 numpy: 1.17.0 scipy: 1.3.0 netCDF4: 1.5.3 pydap: None h5netcdf: None h5py: 2.7.1 Nio: None zarr: None cftime: 1.1.3 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 2.16.0 distributed: None matplotlib: 3.1.1 cartopy: None seaborn: 0.9.0 numbagg: None setuptools: 46.3.1 pip: 19.2.1 conda: 4.8.3 pytest: 5.3.0 IPython: 7.7.0 sphinx: 2.1.2
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  completed xarray 13221727 issue
537934462 MDU6SXNzdWU1Mzc5MzQ0NjI= 3621 ".indexes" not updated when setting values through ".values" kefirbandi 1277781 closed 0     1 2019-12-14T16:27:27Z 2019-12-16T18:38:10Z 2019-12-16T18:38:10Z CONTRIBUTOR      

MCVE Code Sample

```python import xarray as xr

da1 = xr.DataArray([1,2],dims=['x'],coords={'x':[0,1]})

print(da1.indexes) da1['x'].values = [1,2] print(da1.indexes) print('--------') print(da1['x'])

x: Int64Index([0, 1], dtype='int64', name='x') x: Int64Index([0, 1], dtype='int64', name='x') -------- <xarray.DataArray 'x' (x: 2)> array([1, 2]) Coordinates: * x (x) int32 1 2 ```

Expected Output

```python x: Int64Index([0, 1], dtype='int64', name='x') x: Int64Index([1, 2], dtype='int64', name='x')


<xarray.DataArray 'x' (x: 2)> array([1, 2]) Coordinates: * x (x) int32 1 2 ```

Problem Description

  • .indexes gets out of sync with the values stored in the array
  • this is unfortunate as alignment with other array is done through .indexes

The issue does not occur if I a, either do not call ".indexes" before setting the value, or b, call da1['x'] = [1,2] instead of da1['x'].values = [1,2]

Output of xr.show_versions()

INSTALLED VERSIONS ------------------ commit: None python: 3.7.3 | packaged by conda-forge | (default, Jul 1 2019, 22:01:29) [MSC v.1900 64 bit (AMD64)] python-bits: 64 OS: Windows OS-release: 10 machine: AMD64 processor: Intel64 Family 6 Model 60 Stepping 3, GenuineIntel byteorder: little LC_ALL: None LANG: None LOCALE: None.None libhdf5: 1.10.5 libnetcdf: 4.6.3 xarray: 0.14.1 pandas: 0.25.1 numpy: 1.17.1 scipy: 1.3.1 netCDF4: 1.5.2 pydap: None h5netcdf: None h5py: 2.10.0 Nio: None zarr: None cftime: 1.0.3.4 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 2.4.0 distributed: 2.5.1 matplotlib: 3.1.1 cartopy: None seaborn: 0.9.0 numbagg: None setuptools: 41.2.0 pip: 19.2.3 conda: None pytest: 5.1.2 IPython: 7.8.0 sphinx: 2.2.0
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  completed xarray 13221727 issue
414277715 MDU6SXNzdWU0MTQyNzc3MTU= 2786 groupby with non-scalar coordinate kefirbandi 1277781 closed 0     1 2019-02-25T19:52:29Z 2019-10-11T15:55:36Z 2019-10-11T15:55:36Z CONTRIBUTOR      

Code Sample

```python import numpy as np import xarray as xr

def noop(da): return da

def expd(da): return da.expand_dims(['A'])

na=np.array([[1,2],[3,4]]) xa=xr.DataArray(na,dims=['A','B'])

This works:

r1 = xa.groupby('A').apply(noop) print("!!!!")

This doesn't:

r2 = xa.groupby('A').apply(expd) ```

Problem description

Is this intended behavior? The reason I would need this is to be able to increase the size of each group.

Expected Output

I expect r1 to be equivalent to r2

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  completed xarray 13221727 issue
256251595 MDU6SXNzdWUyNTYyNTE1OTU= 1563 0.8.2 incompatible with pandas 0.20.1 ? kefirbandi 1277781 closed 0     4 2017-09-08T13:19:25Z 2017-09-08T23:15:36Z 2017-09-08T20:27:06Z CONTRIBUTOR      

This issue may be related to #1386

I hope this part of the stacktrace is sufficient to demonstrate my point:

File "C:\src\validation\main\risk_reporting\data_access\db_model.py", line 246, in get_data ds = ds.groupby('pvshort').apply(select_latest_pv) File "C:\Anaconda2\lib\site-packages\xarray\core\common.py", line 345, in groupby return self.groupby_cls(self, group, squeeze=squeeze) File "C:\Anaconda2\lib\site-packages\xarray\core\groupby.py", line 226, in init unique_values, group_indices = unique_value_groups(group, sort=sort) File "C:\Anaconda2\lib\site-packages\xarray\core\groupby.py", line 34, in unique_value_groups inverse, values = pd.factorize(ar, sort=sort) File "C:\Anaconda2\lib\site-packages\pandas\core\algorithms.py", line 552, in factorize values = _ensure_arraylike(values) File "C:\Anaconda2\lib\site-packages\pandas\core\algorithms.py", line 166, in _ensure_arraylike values = lib.list_to_object_array(values) TypeError: Argument 'obj' has incorrect type (expected list, got DataArray)

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  completed xarray 13221727 issue

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