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  • xarray 7
id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
714228717 MDExOlB1bGxSZXF1ZXN0NDk3MzcyNTY2 4484 xarray.map kefirbandi 1277781 closed 0     12 2020-10-04T04:11:29Z 2023-10-16T18:54:19Z 2023-10-16T18:54:19Z CONTRIBUTOR   0 pydata/xarray/pulls/4484

UPDATE: Please let me know whether this PR can be considered to be merged. If not I won't bother trying to fix failed tests such as:

would reformat /home/vsts/work/1/s/xarray/core/map.py would reformat /home/vsts/work/1/s/xarray/core/dataset.py would reformat /home/vsts/work/1/s/xarray/tests/test_map.py Oh no! 💥 💔 💥

Thanks


  • [x] Tests added
  • [x] User visible changes (including notable bug fixes) are documented in whats-new.rst
  • [x] New functions/methods are listed in api.rst

I implemented the top-level xarray.map function. It is a generalization of the Dataset.map method for those functions which take more than one DataArray as input. The function will be applied to the intersection of the variables in the datasets.

E.g: f = lambda a, b: b-a map([ds1, ds2], f) More details in the docstring.

(I probably messed up something with git as the commits listed below also include my earlier commits not related to this PR. But the list of files is clean, it only includes what I'd like to merge)

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    xarray 13221727 pull
423742774 MDU6SXNzdWU0MjM3NDI3NzQ= 2835 Dataset.copy(deep=True) does not deepcopy .attrs kefirbandi 1277781 closed 0     12 2019-03-21T13:58:03Z 2022-09-29T16:36:52Z 2022-09-29T16:36:52Z CONTRIBUTOR      

But it would be expected (at least by me) that it does.

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  completed xarray 13221727 issue
623131373 MDU6SXNzdWU2MjMxMzEzNzM= 4087 Bug in conversion frompd.series in 0.15.1 kefirbandi 1277781 closed 0     3 2020-05-22T11:04:11Z 2020-05-22T11:59:40Z 2020-05-22T11:29:46Z CONTRIBUTOR      

Bug in conversion frompd.series

MCVE Code Sample

```python import pandas as pd import xarray as xr

data3 = pd.DataFrame([(1, 2, 1), (2, 2, 1)],columns=['x', 'B', 'A']) data3 = data3.set_index(['x']) data3.rename_axis('tag', axis=1, inplace=True) data3 = data3.stack() print(data3) print(xr.DataArray.from_series(data3).sel(tag='B')) ```

Expected Output

[2,2]

Problem Description

The same code gives the expected output in xarray 0.14.1 Also works correctly if "tag" dimension is properly sorted during DataFrame cretion.

Versions

Output of <tt>xr.show_versions()</tt> INSTALLED VERSIONS ------------------ commit: None python: 3.6.7 | packaged by conda-forge | (default, Jul 2 2019, 02:18:42) [GCC 7.3.0] python-bits: 64 OS: Linux OS-release: 4.1.12-124.38.1.el7uek.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: en_US.utf8 LANG: en_US.utf8 LOCALE: en_US.UTF-8 libhdf5: 1.10.4 libnetcdf: 4.6.3 xarray: 0.15.1 pandas: 0.25.0 numpy: 1.17.0 scipy: 1.3.0 netCDF4: 1.5.3 pydap: None h5netcdf: None h5py: 2.7.1 Nio: None zarr: None cftime: 1.1.3 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 2.16.0 distributed: None matplotlib: 3.1.1 cartopy: None seaborn: 0.9.0 numbagg: None setuptools: 46.3.1 pip: 19.2.1 conda: 4.8.3 pytest: 5.3.0 IPython: 7.7.0 sphinx: 2.1.2
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  completed xarray 13221727 issue
537934462 MDU6SXNzdWU1Mzc5MzQ0NjI= 3621 ".indexes" not updated when setting values through ".values" kefirbandi 1277781 closed 0     1 2019-12-14T16:27:27Z 2019-12-16T18:38:10Z 2019-12-16T18:38:10Z CONTRIBUTOR      

MCVE Code Sample

```python import xarray as xr

da1 = xr.DataArray([1,2],dims=['x'],coords={'x':[0,1]})

print(da1.indexes) da1['x'].values = [1,2] print(da1.indexes) print('--------') print(da1['x'])

x: Int64Index([0, 1], dtype='int64', name='x') x: Int64Index([0, 1], dtype='int64', name='x') -------- <xarray.DataArray 'x' (x: 2)> array([1, 2]) Coordinates: * x (x) int32 1 2 ```

Expected Output

```python x: Int64Index([0, 1], dtype='int64', name='x') x: Int64Index([1, 2], dtype='int64', name='x')


<xarray.DataArray 'x' (x: 2)> array([1, 2]) Coordinates: * x (x) int32 1 2 ```

Problem Description

  • .indexes gets out of sync with the values stored in the array
  • this is unfortunate as alignment with other array is done through .indexes

The issue does not occur if I a, either do not call ".indexes" before setting the value, or b, call da1['x'] = [1,2] instead of da1['x'].values = [1,2]

Output of xr.show_versions()

INSTALLED VERSIONS ------------------ commit: None python: 3.7.3 | packaged by conda-forge | (default, Jul 1 2019, 22:01:29) [MSC v.1900 64 bit (AMD64)] python-bits: 64 OS: Windows OS-release: 10 machine: AMD64 processor: Intel64 Family 6 Model 60 Stepping 3, GenuineIntel byteorder: little LC_ALL: None LANG: None LOCALE: None.None libhdf5: 1.10.5 libnetcdf: 4.6.3 xarray: 0.14.1 pandas: 0.25.1 numpy: 1.17.1 scipy: 1.3.1 netCDF4: 1.5.2 pydap: None h5netcdf: None h5py: 2.10.0 Nio: None zarr: None cftime: 1.0.3.4 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 2.4.0 distributed: 2.5.1 matplotlib: 3.1.1 cartopy: None seaborn: 0.9.0 numbagg: None setuptools: 41.2.0 pip: 19.2.3 conda: None pytest: 5.1.2 IPython: 7.8.0 sphinx: 2.2.0
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  completed xarray 13221727 issue
414277715 MDU6SXNzdWU0MTQyNzc3MTU= 2786 groupby with non-scalar coordinate kefirbandi 1277781 closed 0     1 2019-02-25T19:52:29Z 2019-10-11T15:55:36Z 2019-10-11T15:55:36Z CONTRIBUTOR      

Code Sample

```python import numpy as np import xarray as xr

def noop(da): return da

def expd(da): return da.expand_dims(['A'])

na=np.array([[1,2],[3,4]]) xa=xr.DataArray(na,dims=['A','B'])

This works:

r1 = xa.groupby('A').apply(noop) print("!!!!")

This doesn't:

r2 = xa.groupby('A').apply(expd) ```

Problem description

Is this intended behavior? The reason I would need this is to be able to increase the size of each group.

Expected Output

I expect r1 to be equivalent to r2

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  completed xarray 13221727 issue
424115176 MDExOlB1bGxSZXF1ZXN0MjYzNTM4NTE4 2839 Fixing deepcopy for Dataset.attrs kefirbandi 1277781 closed 0     1 2019-03-22T09:24:54Z 2019-03-30T03:14:38Z 2019-03-30T03:14:38Z CONTRIBUTOR   0 pydata/xarray/pulls/2839
  • [x] Closes #2835
  • [X] Tests added
  • [X] Fully documented, including whats-new.rst for all changes and api.rst for new API
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    xarray 13221727 pull
256251595 MDU6SXNzdWUyNTYyNTE1OTU= 1563 0.8.2 incompatible with pandas 0.20.1 ? kefirbandi 1277781 closed 0     4 2017-09-08T13:19:25Z 2017-09-08T23:15:36Z 2017-09-08T20:27:06Z CONTRIBUTOR      

This issue may be related to #1386

I hope this part of the stacktrace is sufficient to demonstrate my point:

File "C:\src\validation\main\risk_reporting\data_access\db_model.py", line 246, in get_data ds = ds.groupby('pvshort').apply(select_latest_pv) File "C:\Anaconda2\lib\site-packages\xarray\core\common.py", line 345, in groupby return self.groupby_cls(self, group, squeeze=squeeze) File "C:\Anaconda2\lib\site-packages\xarray\core\groupby.py", line 226, in init unique_values, group_indices = unique_value_groups(group, sort=sort) File "C:\Anaconda2\lib\site-packages\xarray\core\groupby.py", line 34, in unique_value_groups inverse, values = pd.factorize(ar, sort=sort) File "C:\Anaconda2\lib\site-packages\pandas\core\algorithms.py", line 552, in factorize values = _ensure_arraylike(values) File "C:\Anaconda2\lib\site-packages\pandas\core\algorithms.py", line 166, in _ensure_arraylike values = lib.list_to_object_array(values) TypeError: Argument 'obj' has incorrect type (expected list, got DataArray)

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  completed xarray 13221727 issue

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