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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at ▲ | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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803075280 | MDU6SXNzdWU4MDMwNzUyODA= | 4880 | Datetime as coordinaets does not convert back to datetime (returns int) | feefladder 33122845 | closed | 0 | 6 | 2021-02-07T22:20:11Z | 2024-04-28T20:13:33Z | 2024-04-28T20:13:32Z | CONTRIBUTOR | What happened:
datetime was in ```python Put your MCVE code hereimport xarray as xr
import numpy as np
import datetime
date_frame = xr.DataArray(dims='time',coords={'time':pd.date_range('2000-01-01',periods=365)},data=np.zeros(365))
print('pandas date range (datetime): ',pd.date_range('2000-01-01',periods=365)[0])
print('dataframe datetime converted to datetime (int): ',date_frame.coords['time'].data[0].astype(datetime.datetime))
print("normal numpy datetime64 converted to datetime (datetime): ",np.datetime64(datetime.datetime(2000,1,1)).astype(datetime.datetime))
if converted to int, it also gives different lengths of int : date_frame: 946684800000000000 946684800000000 normal datetime64^ Anything else we need to know?: it is also mentioned in this SO thread appears to be a problem in the datetime64.... numpy version 1.20.0 pandas version 1.2.1 Environment: Output of <tt>xr.show_versions()</tt>INSTALLED VERSIONS ------------------ commit: None python: 3.7.9 | packaged by conda-forge | (default, Dec 9 2020, 21:08:20) [GCC 9.3.0] python-bits: 64 OS: Linux OS-release: 5.4.0-59-generic machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: en_US.UTF-8 libhdf5: None libnetcdf: None xarray: 0.16.2 pandas: 1.2.1 numpy: 1.20.0 scipy: None netCDF4: None pydap: None h5netcdf: None h5py: None Nio: None zarr: 2.6.1 cftime: None nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 2021.01.1 distributed: 2021.01.1 matplotlib: None cartopy: None seaborn: None numbagg: None pint: None setuptools: 49.6.0.post20210108 pip: 21.0.1 conda: None pytest: None IPython: 7.20.0 sphinx: None |
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completed | xarray 13221727 | issue | ||||||
935747115 | MDU6SXNzdWU5MzU3NDcxMTU= | 5565 | Tests fail when no SciPy installed | feefladder 33122845 | closed | 0 | 0 | 2021-07-02T12:58:49Z | 2021-07-17T21:05:13Z | 2021-07-17T21:05:13Z | CONTRIBUTOR | What happened: Tests failed, also reported in #5564 and relatd to #5559 What you expected to happen: Minimal Complete Verifiable Example:
self = <xarray.tests.test_backends.TestH5NetCDFFileObject object at 0x7f051a6b59a0>
/mnt/e/Git/xarray/xarray/tests/test_backends.py:2887: /mnt/e/Git/xarray/xarray/backends/api.py:483: in open_dataset backend = plugins.get_backend(engine) engine = 'scipy'
/mnt/e/Git/xarray/xarray/backends/plugins.py:156: ValueError ________ test_3641 ___________ [gw0] linux -- Python 3.9.5 /home/joeperdefloep/miniconda3/envs/xr-dev/bin/python3.9
/mnt/e/Git/xarray/xarray/tests/test_interp.py:733: /mnt/e/Git/xarray/xarray/core/dataarray.py:1687: in interp ds = self._to_temp_dataset().interp( /mnt/e/Git/xarray/xarray/core/dataset.py:3146: in interp variables[name] = missing.interp(var, var_indexers, method, kwargs) /mnt/e/Git/xarray/xarray/core/missing.py:633: in interp interped = interp_func( /mnt/e/Git/xarray/xarray/core/missing.py:752: in interp_func return _interpnd(var, x, new_x, func, kwargs) /mnt/e/Git/xarray/xarray/core/missing.py:770: in _interpnd return _interp1d(var, x, new_x, func, kwargs) /mnt/e/Git/xarray/xarray/core/missing.py:758: in _interp1d rslt = func(x, var, assume_sorted=True, kwargs)(np.ravel(new_x)) self = <[AttributeError("'ScipyInterpolator' object has no attribute 'method'") raised in repr()] ScipyInterpolator object at 0x7f1aa547fc40> xi = <xarray.IndexVariable 'time' (time: 2)> array([0.00000e+00, 1.57788e+19]), yi = array([0, 1]), method = 'linear' fill_value = None, assume_sorted = True, copy = False, bounds_error = False, order = None, kwargs = {}
/mnt/e/Git/xarray/xarray/core/missing.py:129: ModuleNotFoundError =================================================== warnings summary =================================================== xarray/tests/test_dataarray.py::TestReduce1D::test_min[x3-5-2-1] xarray/tests/test_dataarray.py::TestReduce1D::test_max[x3-5-2-1] xarray/tests/test_dataarray.py::TestReduce2D::test_min[x2-minindex2-maxindex2-nanindex2] xarray/tests/test_dataarray.py::TestReduce2D::test_max[x2-minindex2-maxindex2-nanindex2] /home/joeperdefloep/miniconda3/envs/xr-dev/lib/python3.9/site-packages/numpy/core/fromnumeric.py:86: RuntimeWarning: invalid value encountered in reduce return ufunc.reduce(obj, axis, dtype, out, **passkwargs) -- Docs: https://docs.pytest.org/en/stable/warnings.html =============================================== short test summary info ================================================ FAILED xarray/tests/test_backends.py::TestH5NetCDFFileObject::test_open_fileobj - ValueError: unrecognized engine sci... FAILED xarray/tests/test_interp.py::test_3641 - ModuleNotFoundError: No module named 'scipy' ============= 2 failed, 8243 passed, 3776 skipped, 29 xfailed, 26 xpassed, 4 warnings in 229.01s (0:03:49) ============= ``` Anything else we need to know?: Environment: Output of <tt>xr.show_versions()</tt>INSTALLED VERSIONS ------------------ commit: a874739378f28f68c4e184c5bf1cebdb749dc836 python: 3.9.5 | packaged by conda-forge | (default, Jun 19 2021, 00:32:32) [GCC 9.3.0] python-bits: 64 OS: Linux OS-release: 4.19.128-microsoft-standard machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: C.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: 1.12.0 libnetcdf: 4.7.4 xarray: 0.18.2.dev69+gc472f8a4 pandas: 1.2.5 numpy: 1.21.0 scipy: None netCDF4: 1.5.7 pydap: None h5netcdf: 0.11.0 h5py: 3.3.0 Nio: None zarr: None cftime: 1.5.0 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: None distributed: None matplotlib: None cartopy: None seaborn: None numbagg: None pint: None setuptools: 49.6.0.post20210108 pip: 21.1.3 conda: None pytest: 6.2.4 IPython: None sphinx: None |
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completed | xarray 13221727 | issue | ||||||
935692190 | MDExOlB1bGxSZXF1ZXN0NjgyNTYyNjQx | 5564 | added netCDF4 requirement to failing tests | feefladder 33122845 | closed | 0 | 4 | 2021-07-02T11:43:16Z | 2021-07-17T21:05:00Z | 2021-07-17T21:04:59Z | CONTRIBUTOR | 0 | pydata/xarray/pulls/5564 |
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xarray 13221727 | pull | |||||
812416075 | MDU6SXNzdWU4MTI0MTYwNzU= | 4930 | xr.open_zarr converts 0 values to nan | feefladder 33122845 | closed | 0 | 0 | 2021-02-19T23:01:15Z | 2021-02-20T10:43:01Z | 2021-02-20T10:43:01Z | CONTRIBUTOR | What happened: It returned an array of nan values What you expected to happen: an array of zeroes Minimal Complete Verifiable Example: ZeroToNan.zip ```python Your code herez = zarr.open('ZeroToNan.zip') print(z['foo__a'][:]) print(xr.open_zarr(z.store).foo__a.values) ``` Anything else we need to know?: I also posted this problem here and here Environment: Output of <tt>xr.show_versions()</tt>INSTALLED VERSIONS ------------------ commit: None python: 3.9.1 | packaged by conda-forge | (default, Jan 26 2021, 01:34:10) [GCC 9.3.0] python-bits: 64 OS: Linux OS-release: 5.4.0-59-generic machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: en_US.UTF-8 libhdf5: None libnetcdf: None xarray: 0.16.2 pandas: 1.2.1 numpy: 1.20.0 scipy: None netCDF4: None pydap: None h5netcdf: None h5py: None Nio: None zarr: 2.6.1 cftime: None nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 2021.02.0 distributed: 2021.02.0 matplotlib: 3.3.4 cartopy: None seaborn: None numbagg: None pint: None setuptools: 49.6.0.post20210108 pip: 21.0.1 conda: None pytest: 6.2.2 IPython: 7.20.0 sphinx: None |
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completed | xarray 13221727 | issue |
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