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  • xarray 13
id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
2026963757 I_kwDOAMm_X8540QMt 8522 Test failures on `main` max-sixty 5635139 closed 0     7 2023-12-05T19:22:01Z 2023-12-06T18:48:24Z 2023-12-06T17:28:13Z MEMBER      

What is your issue?

Any ideas what could be causing these? I can't immediately reproduce locally.

https://github.com/pydata/xarray/actions/runs/7105414268/job/19342564583

``` Error: TestDataArray.test_computation_objects[int64-method_groupby_bins-data]

AssertionError: Left and right DataArray objects are not close

Differing values: L <Quantity([[ nan nan 1. 1. ] [2. 2. 3. 3. ] [4. 4. 5. 5. ] [6. 6. 7. 7. ] [8. 8. 9. 9.333333]], 'meter')> R <Quantity([[0. 0. 1. 1. ] [2. 2. 3. 3. ] [4. 4. 5. 5. ] [6. 6. 7. 7. ] [8. 8. 9. 9.333333]], 'meter')> ```

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  completed xarray 13221727 issue
1899109828 PR_kwDOAMm_X85aeino 8193 Add some more mypy checks max-sixty 5635139 closed 0     7 2023-09-15T21:40:14Z 2023-09-17T19:34:55Z 2023-09-17T19:24:58Z MEMBER   0 pydata/xarray/pulls/8193

This disallows redundant casts

FWIW I thought we had gone through many of the tests and forced them to have typed defs, maybe with the intention of turning on some elements of strict mode. But then I don't think we have any strictness checks at the moment, and I see many functions in the tests which don't have typing. Am I mis-rembering?? Or maybe we started but didn't get far enough (it is a big project...)

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    xarray 13221727 pull
994264727 MDExOlB1bGxSZXF1ZXN0NzMyMjM5NjEw 5787 Update issue template to include a checklist max-sixty 5635139 closed 0     7 2021-09-12T19:47:23Z 2022-04-27T08:23:27Z 2022-04-27T00:56:27Z MEMBER   0 pydata/xarray/pulls/5787

This may be overly prescriptive. We've had a number of recent issues which aren't minimal and link to external data, and then these languish on the Issue Tracker unanswered. That's a loss of time for all involved — the reporter of the issue as well as the maintainers.

To the extent we can predict which issues will languish, it would be better to give that guidance up front, and encourage examples which are easier to engage with. So this introduces a checklist that people need to proactively fill out.

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    xarray 13221727 pull
777586739 MDExOlB1bGxSZXF1ZXN0NTQ3ODQxNzk4 4753 Replace SortedKeysDict with dict max-sixty 5635139 closed 0     7 2021-01-03T07:02:39Z 2021-05-19T19:30:19Z 2021-05-19T19:29:31Z MEMBER   0 pydata/xarray/pulls/4753
  • [x] Tests added
  • [x] Passes isort . && black . && mypy . && flake8
  • [x] User visible changes (including notable bug fixes) are documented in whats-new.rst

Inspired by @mathause research in https://github.com/pydata/xarray/issues/4571#issuecomment-724848270

Note that one test is removed: https://github.com/pydata/xarray/compare/master...max-sixty:sorted-keys?expand=1#diff-2db7f6624707083db4aaab1b62eb11352200ec9d3ac1055de84877912226d7b5L560

While I'm keen on simplifying the data structures, this may have some unforeseen consequences, and at least deserves some thought re how we handle differently ordered dims.

Currently this PR retains the sorting in reprs.

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    xarray 13221727 pull
705050342 MDExOlB1bGxSZXF1ZXN0NDg5ODYwODEx 4440 Add doctests to release notes max-sixty 5635139 closed 0     7 2020-09-20T05:39:51Z 2020-09-20T21:24:18Z 2020-09-20T19:33:36Z MEMBER   0 pydata/xarray/pulls/4440

Any other changes?

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    xarray 13221727 pull
521754870 MDU6SXNzdWU1MjE3NTQ4NzA= 3514 Should we cache some small properties? max-sixty 5635139 open 0     7 2019-11-12T19:28:21Z 2019-11-16T04:32:11Z   MEMBER      

I was doing some profiling on isel, and see there are some properties that (I think) never change, but are called frequently. Should we cache these on their object?

Pandas uses cache_readonly for these cases.

Here's a case: we call LazilyOuterIndexedArray.shape frequently when doing a simple indexing operation. Each call takes ~150µs. An attribute lookup on a python object takes ~50ns (i.e. 3000x faster). IIUC the result on that property should never change.

I don't think this is the solution to performance issues, and there's some additional complexity. Could they be easy & small wins, though?

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    xarray 13221727 issue
514142439 MDExOlB1bGxSZXF1ZXN0MzMzODA1NTUy 3459 Dataset.map max-sixty 5635139 closed 0     7 2019-10-29T18:46:04Z 2019-11-09T22:08:07Z 2019-11-09T21:10:23Z MEMBER   0 pydata/xarray/pulls/3459
  • [x] Helps https://github.com/pydata/xarray/issues/1251
  • [x] Tests added
  • [x] Passes black . && mypy . && flake8
  • [x] Fully documented, including whats-new.rst for all changes and api.rst for new API

This is the first step towards organizing these functions a bit better, as outlined in https://github.com/pydata/xarray/issues/1251, https://github.com/pydata/xarray/issues/1618, https://github.com/pydata/xarray/pull/2674

While this one is a fairly easy decision, others are going to be harder. Open to a more methodical up-front process before we start making changes, if we think that's necessary.

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    xarray 13221727 pull
514164837 MDExOlB1bGxSZXF1ZXN0MzMzODI0ODMx 3460 fix test suite warnings re `drop` max-sixty 5635139 closed 0     7 2019-10-29T19:24:03Z 2019-10-31T04:39:11Z 2019-10-31T01:24:16Z MEMBER   0 pydata/xarray/pulls/3460

Some more warnings silenced

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    xarray 13221727 pull
478690528 MDExOlB1bGxSZXF1ZXN0MzA1NzUxMzc0 3194 Remove future statements max-sixty 5635139 closed 0     7 2019-08-08T21:14:35Z 2019-08-09T04:33:11Z 2019-08-09T04:33:08Z MEMBER   0 pydata/xarray/pulls/3194

Not sure why these weren't picked up in some of the previous python3-ifying

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    xarray 13221727 pull
448295143 MDExOlB1bGxSZXF1ZXN0MjgyMTEyOTQ4 2987 Implement @ operator for DataArray max-sixty 5635139 closed 0     7 2019-05-24T18:14:20Z 2019-06-01T20:00:24Z 2019-06-01T19:42:21Z MEMBER   0 pydata/xarray/pulls/2987
  • [x] Closes https://github.com/pydata/xarray/issues/1053
  • [x] Tests added
  • [x] Fully documented, including whats-new.rst for all changes and api.rst for new API

Is it really this easy? What am I missing?

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    xarray 13221727 pull
267826297 MDU6SXNzdWUyNjc4MjYyOTc= 1651 ENH: Forward & back fill methods max-sixty 5635139 closed 0     7 2017-10-23T21:39:18Z 2018-02-09T17:36:30Z 2018-02-09T17:36:29Z MEMBER      

I think with np.flip and bn.push, this should be simple. They're both fairly new and so would require version checks / upgrading the minimums.

One small issue, I wonder if anyone has come across this: bottleneck returns the numpy array rather than the DataArray - is that because it's not operating with the correct numpy interface?

Forward fill: array.values = bn.push(array.values, axis=array.get_axis_num(axis_name))

Backfill: ``` axis = array.get_axis_num(axis_name)

reverse for bfill

array = np.flip(array, axis=axis)

fill

array.values = bn.push(array.values, axis=axis)

reverse back to original

result = np.flip(scaling, axis=date_axis) ```

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  completed xarray 13221727 issue
156591025 MDU6SXNzdWUxNTY1OTEwMjU= 859 BUG: Rolling on Dataset max-sixty 5635139 closed 0     7 2016-05-24T19:35:32Z 2017-03-31T03:10:45Z 2017-03-31T03:10:45Z MEMBER      

This looks like it's available with dir / tab complete, but actually isn't:

``` python In [13]: xr.DataArray(np.random.rand(10,3)).to_dataset('dim_1').rolling


AttributeError Traceback (most recent call last) <ipython-input-13-438d3638a0d0> in <module>() ----> 1 xr.DataArray(np.random.rand(10,3)).to_dataset('dim_1').rolling

/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/xarray/core/common.py in getattr(self, name) 135 return source[name] 136 raise AttributeError("%r object has no attribute %r" % --> 137 (type(self).name, name)) 138 139 def setattr(self, name, value):

AttributeError: 'Dataset' object has no attribute 'rolling' ```

I think this could be easy to implement as an .apply operation? (indeed, that could be a reasonable path for a whole host of operations - i.e. try and apply them to each array in the ds?)

Also, as a very narrow point, I'm not sure why .rolling_cls is public? Probably should be private?

Finally, the Rolling implementation is pretty sweet. I've been getting my hands dirty in the pandas one recently, and that we can have something as well featured as that with so few lines of code 👍

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  completed xarray 13221727 issue
124441012 MDU6SXNzdWUxMjQ0NDEwMTI= 692 Transpose modifies dtype of index, when a PeriodIndex max-sixty 5635139 closed 0     7 2015-12-31T07:11:56Z 2016-01-03T18:41:04Z 2016-01-02T01:48:48Z MEMBER      

This is very peculiar & specific, but also fairly impactful for us.

If you - Create a Dataset with a coord that is a PeriodIndex - Transpose that coord - Add a variable to the Dataset that needs to be reindexed

...then the type of the index changes from object to int64. This then causes other arrays added to that dataset to show up as NaNs throughout.

Here's an example. Note the dtype('O')) at the end of each output.

``` python In [61]: series = pd.Series(np.random.rand(10),index=pd.period_range(start='2000', periods=10,name='date')) ​ ds = xray.Dataset({'number 1':series}) ds['number 2'] = ds['number 1'] ds, ds.date.dtype Out[61]: (<xray.Dataset> Dimensions: (date: 10) Coordinates: * date (date) object 10957 10958 10959 10960 10961 10962 10963 10964 ... Data variables: number 1 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 0.6723 ... number 2 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 0.6723 ..., dtype('O')) In [62]:

ds, ds.date.dtype ds=ds.transpose('date') ds, ds.date.dtype Out[62]: (<xray.Dataset> Dimensions: (date: 10) Coordinates: * date (date) object 10957 10958 10959 10960 10961 10962 10963 10964 ... Data variables: number 1 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 0.6723 ... number 2 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 0.6723 ..., dtype('O')) In [63]:

ds ds['number 3'] = ds['number 1'] ds, ds.date.dtype Out[63]: (<xray.Dataset> Dimensions: (date: 10) Coordinates: * date (date) object 10957 10958 10959 10960 10961 10962 10963 10964 ... Data variables: number 1 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 0.6723 ... number 2 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 0.6723 ... number 3 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 0.6723 ..., dtype('O')) In [64]:

ds ds['number 4'] = ds['number 1'][:5] ds, ds.date.dtype Out[64]: (<xray.Dataset> Dimensions: (date: 10) Coordinates: * date (date) int64 10957 10958 10959 10960 10961 10962 10963 10964 ... Data variables: number 1 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 0.6723 ... number 2 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 0.6723 ... number 3 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 0.6723 ... number 4 (date) float64 0.1133 0.5952 0.5467 0.2035 0.2022 nan nan nan ..., dtype('int64')) ```

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  completed xarray 13221727 issue

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