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- CI setup: use mamba and matplotlib-base · 16 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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745413055 | https://github.com/pydata/xarray/pull/4672#issuecomment-745413055 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0NTQxMzA1NQ== | mathause 10194086 | 2020-12-15T16:40:28Z | 2020-12-15T16:40:28Z | MEMBER | Ok, let's get this in. matplotlib-base and nodefaults should be quite uncontroversial. If mamba makes problems it's quickly removed. I plan to add a whats new entry concerning the CI speed-up (#4672, #4685 & #4694) in #4694 |
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CI setup: use mamba and matplotlib-base 761270240 | |
744749458 | https://github.com/pydata/xarray/pull/4672#issuecomment-744749458 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0NDc0OTQ1OA== | mathause 10194086 | 2020-12-14T22:25:47Z | 2020-12-14T22:25:47Z | MEMBER | See #4694 |
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CI setup: use mamba and matplotlib-base 761270240 | |
744710105 | https://github.com/pydata/xarray/pull/4672#issuecomment-744710105 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0NDcxMDEwNQ== | mathause 10194086 | 2020-12-14T21:05:38Z | 2020-12-14T21:05:38Z | MEMBER | I thought that |
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CI setup: use mamba and matplotlib-base 761270240 | |
744602415 | https://github.com/pydata/xarray/pull/4672#issuecomment-744602415 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0NDYwMjQxNQ== | dcherian 2448579 | 2020-12-14T17:46:46Z | 2020-12-14T17:46:46Z | MEMBER | Not sure how much it would help on CI, but it would be nice to get |
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CI setup: use mamba and matplotlib-base 761270240 | |
744601503 | https://github.com/pydata/xarray/pull/4672#issuecomment-744601503 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0NDYwMTUwMw== | dcherian 2448579 | 2020-12-14T17:45:11Z | 2020-12-14T17:45:11Z | MEMBER |
Seems like a great improvement to me! |
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CI setup: use mamba and matplotlib-base 761270240 | |
744445362 | https://github.com/pydata/xarray/pull/4672#issuecomment-744445362 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0NDQ0NTM2Mg== | mathause 10194086 | 2020-12-14T13:37:36Z | 2020-12-14T13:37:36Z | MEMBER | I wasn't really able to get to the bottom of this. Still, using mamba and matplotlib-base should speed up the installation step by 2 to 5 minutes. If we are fine switching to the faster but maybe not-as-mature mamba this can be merged on green. |
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CI setup: use mamba and matplotlib-base 761270240 | |
744040595 | https://github.com/pydata/xarray/pull/4672#issuecomment-744040595 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0NDA0MDU5NQ== | mathause 10194086 | 2020-12-13T17:29:32Z | 2020-12-13T17:29:32Z | MEMBER |
Sometimes it also works fine with numba 0.52... So unfortunately I don't know. My suspicion is that we get different CPUs by chance. I added a new step to our CI: On my dualboot machine the test suite takes 23 min on windows and 15 min on linux. Thus, already quite a difference but not as large as on azure where the windows test seem to take about twice as long as the linux tests. |
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CI setup: use mamba and matplotlib-base 761270240 | |
743924206 | https://github.com/pydata/xarray/pull/4672#issuecomment-743924206 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0MzkyNDIwNg== | keewis 14808389 | 2020-12-13T00:13:02Z | 2020-12-13T17:09:36Z | MEMBER |
that's really strange. Why do we see that much of a speed-up once we downgrade
yes, I will have to update those. I think until the index refactor we can safely Edit: see #4685
I think |
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CI setup: use mamba and matplotlib-base 761270240 | |
743922542 | https://github.com/pydata/xarray/pull/4672#issuecomment-743922542 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0MzkyMjU0Mg== | mathause 10194086 | 2020-12-12T23:59:54Z | 2020-12-12T23:59:54Z | MEMBER | locally on windows I find no large difference between numba 0.51 and 0.52, so that does not seem to be the root cause... @keewis there are about 750 xfailed tests in What is the difference between |
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CI setup: use mamba and matplotlib-base 761270240 | |
743780782 | https://github.com/pydata/xarray/pull/4672#issuecomment-743780782 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0Mzc4MDc4Mg== | mathause 10194086 | 2020-12-12T16:33:39Z | 2020-12-12T16:33:39Z | MEMBER | Thanks for figuring this out. Still, I think I have to test this locally - the time the CI takes is very inconsistent on azure. Yes, I think this PR is helpful anyway and should bring down the ci time a bit. |
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CI setup: use mamba and matplotlib-base 761270240 | |
743488518 | https://github.com/pydata/xarray/pull/4672#issuecomment-743488518 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0MzQ4ODUxOA== | keewis 14808389 | 2020-12-12T00:01:42Z | 2020-12-12T00:01:42Z | MEMBER | pinning |
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CI setup: use mamba and matplotlib-base 761270240 | |
743462860 | https://github.com/pydata/xarray/pull/4672#issuecomment-743462860 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0MzQ2Mjg2MA== | keewis 14808389 | 2020-12-11T22:35:55Z | 2020-12-11T22:40:25Z | MEMBER | I'm a bit confused, the windows CI used to take about as long as the macOS CI to complete. The last run for which that was true was about a week ago, does anyone know what changed since then? Edit: maybe because of the release of |
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CI setup: use mamba and matplotlib-base 761270240 | |
743445866 | https://github.com/pydata/xarray/pull/4672#issuecomment-743445866 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0MzQ0NTg2Ng== | mathause 10194086 | 2020-12-11T21:52:05Z | 2020-12-11T21:52:05Z | MEMBER | Here is what I learned:
* The same tests are slow in windows and linux. Just, that those on windows take about twice as long.
* The following test seem to be slow:
* I am not sure what takes long in Windows py37
```
9.52s call xarray/tests/test_distributed.py::test_dask_distributed_netcdf_roundtrip[netcdf4-NETCDF3_CLASSIC]
9.12s call xarray/tests/test_distributed.py::test_dask_distributed_zarr_integration_test[False-True]
8.66s call xarray/tests/test_distributed.py::test_dask_distributed_zarr_integration_test[False-False]
8.50s call xarray/tests/test_distributed.py::test_dask_distributed_netcdf_roundtrip[netcdf4-NETCDF4]
8.48s call xarray/tests/test_distributed.py::test_dask_distributed_read_netcdf_integration_test[scipy-NETCDF3_64BIT]
8.34s call xarray/tests/test_distributed.py::test_dask_distributed_netcdf_roundtrip[netcdf4-NETCDF4_CLASSIC]
8.34s call xarray/tests/test_distributed.py::test_dask_distributed_netcdf_roundtrip[h5netcdf-NETCDF4]
7.72s call xarray/tests/test_distributed.py::test_dask_distributed_read_netcdf_integration_test[netcdf4-NETCDF4]
7.72s call xarray/tests/test_distributed.py::test_dask_distributed_read_netcdf_integration_test[h5netcdf-NETCDF4]
7.72s call xarray/tests/test_distributed.py::test_dask_distributed_zarr_integration_test[True-False]
7.71s call xarray/tests/test_distributed.py::test_dask_distributed_zarr_integration_test[True-True]
7.42s call xarray/tests/test_distributed.py::test_dask_distributed_read_netcdf_integration_test[netcdf4-NETCDF4_CLASSIC]
7.35s call xarray/tests/test_distributed.py::test_dask_distributed_read_netcdf_integration_test[netcdf4-NETCDF3_CLASSIC]
6.45s call xarray/tests/test_distributed.py::test_dask_distributed_netcdf_roundtrip[scipy-NETCDF3_64BIT]
6.26s call xarray/tests/test_dataset.py::TestDataset::test_unstack_sparse
6.06s call xarray/tests/test_sparse.py::TestSparseDataArrayAndDataset::test_groupby_bins
5.46s call xarray/tests/test_plot.py::TestDatasetScatterPlots::test_facetgrid_hue_style
5.35s call xarray/tests/test_interp.py::test_interpolate_chunk_advanced[linear]
5.10s call xarray/tests/test_distributed.py::test_dask_distributed_rasterio_integration_test
5.00s call xarray/tests/test_plot.py::TestFacetedLinePlots::test_facetgrid_shape
4.40s call xarray/tests/test_interp.py::test_interpolate_chunk_advanced[nearest]
```
Linux py37
```
5.78s call xarray/tests/test_distributed.py::test_dask_distributed_zarr_integration_test[False-True]
5.62s call xarray/tests/test_distributed.py::test_dask_distributed_zarr_integration_test[False-False]
5.55s call xarray/tests/test_distributed.py::test_dask_distributed_netcdf_roundtrip[h5netcdf-NETCDF4]
5.34s call xarray/tests/test_distributed.py::test_dask_distributed_zarr_integration_test[True-False]
5.31s call xarray/tests/test_distributed.py::test_dask_distributed_netcdf_roundtrip[netcdf4-NETCDF4]
5.30s call xarray/tests/test_distributed.py::test_dask_distributed_netcdf_roundtrip[netcdf4-NETCDF4_CLASSIC]
5.15s call xarray/tests/test_distributed.py::test_dask_distributed_netcdf_roundtrip[netcdf4-NETCDF3_CLASSIC]
5.10s call xarray/tests/test_distributed.py::test_dask_distributed_rasterio_integration_test
4.98s call xarray/tests/test_distributed.py::test_dask_distributed_zarr_integration_test[True-True]
4.91s call xarray/tests/test_distributed.py::test_dask_distributed_cfgrib_integration_test
4.87s call xarray/tests/test_distributed.py::test_dask_distributed_read_netcdf_integration_test[netcdf4-NETCDF3_CLASSIC]
4.82s call xarray/tests/test_distributed.py::test_dask_distributed_read_netcdf_integration_test[netcdf4-NETCDF4_CLASSIC]
4.77s call xarray/tests/test_distributed.py::test_dask_distributed_read_netcdf_integration_test[scipy-NETCDF3_64BIT]
4.75s call xarray/tests/test_distributed.py::test_dask_distributed_read_netcdf_integration_test[h5netcdf-NETCDF4]
4.67s call xarray/tests/test_distributed.py::test_dask_distributed_read_netcdf_integration_test[netcdf4-NETCDF4]
4.32s call xarray/tests/test_distributed.py::test_dask_distributed_netcdf_roundtrip[scipy-NETCDF3_64BIT]
3.55s call xarray/tests/test_dataset.py::TestDataset::test_unstack_sparse
3.45s call properties/test_pandas_roundtrip.py::test_roundtrip_dataset
3.07s call xarray/tests/test_plot.py::TestFacetedLinePlots::test_facetgrid_shape
2.70s call xarray/tests/test_plot.py::TestDatasetScatterPlots::test_facetgrid_hue_style
2.67s call xarray/tests/test_sparse.py::TestSparseDataArrayAndDataset::test_groupby_bins
```
|
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CI setup: use mamba and matplotlib-base 761270240 | |
742870408 | https://github.com/pydata/xarray/pull/4672#issuecomment-742870408 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0Mjg3MDQwOA== | max-sixty 5635139 | 2020-12-10T23:40:49Z | 2020-12-10T23:40:49Z | MEMBER |
If I understand the proposal correctly — a different approach is to change the scope of the parameterizations rather than remove them — and then they only run once; e.g. |
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CI setup: use mamba and matplotlib-base 761270240 | |
742827949 | https://github.com/pydata/xarray/pull/4672#issuecomment-742827949 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0MjgyNzk0OQ== | mathause 10194086 | 2020-12-10T22:02:34Z | 2020-12-10T22:02:34Z | MEMBER | No..., it failed at 99%. I don't entirely get it. The tests were well under way when I left. So I'd really be interested to get the timings of the tests to see what takes so long...
Yes, that's of course another good alternative. |
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CI setup: use mamba and matplotlib-base 761270240 | |
742750024 | https://github.com/pydata/xarray/pull/4672#issuecomment-742750024 | https://api.github.com/repos/pydata/xarray/issues/4672 | MDEyOklzc3VlQ29tbWVudDc0Mjc1MDAyNA== | andersy005 13301940 | 2020-12-10T19:39:33Z | 2020-12-10T19:39:33Z | MEMBER |
I just tried running the windows CI via Github actions, and I noticed some improvements. The entire run takes ~ 45 minutes If interested, here's the workflow configuration file I am using... Also, I am happy to submit a PR if need be. |
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CI setup: use mamba and matplotlib-base 761270240 |
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