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  • rabernat · 4 ✖

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  • Serialization issue with distributed, h5netcdf, and fsspec (ImplicitToExplicitIndexingAdapter) · 4 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
730467523 https://github.com/pydata/xarray/issues/4591#issuecomment-730467523 https://api.github.com/repos/pydata/xarray/issues/4591 MDEyOklzc3VlQ29tbWVudDczMDQ2NzUyMw== rabernat 1197350 2020-11-19T15:54:38Z 2020-11-19T15:54:38Z MEMBER

This is fixed by intake/filesystem_spec#477.

However, the existence of this issue points to the need for more ecosystem-wide integration testing of xarray / dask / zarr / fsspec. I know we discussed this is on some other issue, but I can't find it...

 
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   Serialization issue with distributed, h5netcdf, and fsspec (ImplicitToExplicitIndexingAdapter) 745801652
729863863 https://github.com/pydata/xarray/issues/4591#issuecomment-729863863 https://api.github.com/repos/pydata/xarray/issues/4591 MDEyOklzc3VlQ29tbWVudDcyOTg2Mzg2Mw== rabernat 1197350 2020-11-18T18:15:16Z 2020-11-18T18:15:16Z MEMBER

Thanks for your quick response to this Martin!

 
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   Serialization issue with distributed, h5netcdf, and fsspec (ImplicitToExplicitIndexingAdapter) 745801652
729796223 https://github.com/pydata/xarray/issues/4591#issuecomment-729796223 https://api.github.com/repos/pydata/xarray/issues/4591 MDEyOklzc3VlQ29tbWVudDcyOTc5NjIyMw== rabernat 1197350 2020-11-18T16:31:14Z 2020-11-18T16:31:14Z MEMBER

Can you figure out how the http version differs from the gcs version? That might hold a clue.

 
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   Serialization issue with distributed, h5netcdf, and fsspec (ImplicitToExplicitIndexingAdapter) 745801652
729793908 https://github.com/pydata/xarray/issues/4591#issuecomment-729793908 https://api.github.com/repos/pydata/xarray/issues/4591 MDEyOklzc3VlQ29tbWVudDcyOTc5MzkwOA== rabernat 1197350 2020-11-18T16:27:30Z 2020-11-18T16:27:30Z MEMBER

I finally found a permutation that works, which makes me think this is an fsspec error.

```python import gcsfs

gcs = gcsfs.GCSFileSystem() url = 'gs://ldeo-glaciology/bedmachine/BedMachineAntarctica_2019-11-05_v01.nc'
openfile = gcs.open(url, mode='rb') dsgcs = xr.open_dataset(openfile, chunks=3000) dsgcs.surface.mean().compute() ```

 
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   Serialization issue with distributed, h5netcdf, and fsspec (ImplicitToExplicitIndexingAdapter) 745801652

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