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  • shoyer · 4 ✖

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  • IPython crash after xarray.opendataset : free():invalid next size (fast) · 4 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
422459458 https://github.com/pydata/xarray/issues/2275#issuecomment-422459458 https://api.github.com/repos/pydata/xarray/issues/2275 MDEyOklzc3VlQ29tbWVudDQyMjQ1OTQ1OA== shoyer 1217238 2018-09-18T16:25:32Z 2018-09-18T16:25:32Z MEMBER

You might need to make a new conda environment. I'm not sure why it's only showing 1.2.4 as the latest release.

On Tue, Sep 18, 2018 at 6:37 AM dkobashi notifications@github.com wrote:

Your suggestion did not work. I got the following. Is there any other way to update netcdf4 without messing up the dependencies of other python tools? Thanks, -DJ

~$ conda update netcdf4 Fetching package metadata ........... Solving package specifications: .

All requested packages already installed.

packages in environment at ~/anaconda2/envs/roms:

netcdf4 1.2.4 np113py27_0

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/pydata/xarray/issues/2275#issuecomment-422396141, or mute the thread https://github.com/notifications/unsubscribe-auth/ABKS1leMnGsJ9MqJMP7j2pMDrij6dKv8ks5ucPc0gaJpZM4VJsnq . 

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   IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651
422218389 https://github.com/pydata/xarray/issues/2275#issuecomment-422218389 https://api.github.com/repos/pydata/xarray/issues/2275 MDEyOklzc3VlQ29tbWVudDQyMjIxODM4OQ== shoyer 1217238 2018-09-18T00:58:25Z 2018-09-18T00:58:25Z MEMBER

@dkobashi conda update netcdf4 should do it for you

 
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   IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651
422126176 https://github.com/pydata/xarray/issues/2275#issuecomment-422126176 https://api.github.com/repos/pydata/xarray/issues/2275 MDEyOklzc3VlQ29tbWVudDQyMjEyNjE3Ng== shoyer 1217238 2018-09-17T18:43:35Z 2018-09-17T18:43:35Z MEMBER

@dkobashi how did you install Python?

 
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   IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651
403954586 https://github.com/pydata/xarray/issues/2275#issuecomment-403954586 https://api.github.com/repos/pydata/xarray/issues/2275 MDEyOklzc3VlQ29tbWVudDQwMzk1NDU4Ng== shoyer 1217238 2018-07-10T20:26:39Z 2018-07-10T20:26:39Z MEMBER

Can you please share the output of xarray.show_versions() and an example of the your code that triggers this error?

My free is that this is a bug in one of the underlying libraries xarray uses for reading netCDF files.

 
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   IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651

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