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- IPython crash after xarray.opendataset : free():invalid next size (fast) · 9 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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422459458 | https://github.com/pydata/xarray/issues/2275#issuecomment-422459458 | https://api.github.com/repos/pydata/xarray/issues/2275 | MDEyOklzc3VlQ29tbWVudDQyMjQ1OTQ1OA== | shoyer 1217238 | 2018-09-18T16:25:32Z | 2018-09-18T16:25:32Z | MEMBER | You might need to make a new conda environment. I'm not sure why it's only showing 1.2.4 as the latest release. On Tue, Sep 18, 2018 at 6:37 AM dkobashi notifications@github.com wrote:
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IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651 | |
422396141 | https://github.com/pydata/xarray/issues/2275#issuecomment-422396141 | https://api.github.com/repos/pydata/xarray/issues/2275 | MDEyOklzc3VlQ29tbWVudDQyMjM5NjE0MQ== | dkobashi 8714949 | 2018-09-18T13:36:54Z | 2018-09-18T13:36:54Z | NONE | Your suggestion did not work. I got the following. Is there any other way to update netcdf4 without messing up the dependencies of other python tools? Thanks, -DJ ``` ~$ conda update netcdf4 Fetching package metadata ........... Solving package specifications: . All requested packages already installed.packages in environment at ~/anaconda2/envs/roms:netcdf4 1.2.4 np113py27_0 |
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IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651 | |
422218389 | https://github.com/pydata/xarray/issues/2275#issuecomment-422218389 | https://api.github.com/repos/pydata/xarray/issues/2275 | MDEyOklzc3VlQ29tbWVudDQyMjIxODM4OQ== | shoyer 1217238 | 2018-09-18T00:58:25Z | 2018-09-18T00:58:25Z | MEMBER | @dkobashi |
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IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651 | |
422152422 | https://github.com/pydata/xarray/issues/2275#issuecomment-422152422 | https://api.github.com/repos/pydata/xarray/issues/2275 | MDEyOklzc3VlQ29tbWVudDQyMjE1MjQyMg== | dkobashi 8714949 | 2018-09-17T20:07:03Z | 2018-09-17T20:07:03Z | NONE | I use Anaconda python. My conda version is as follow platform : linux-64 conda version : 4.3.32 conda is private : False conda-env version : 4.3.32 conda-build version : 3.0.27 python version : 2.7.14.final.0 requests version : 2.18.4 I attach xarray.show_versions() at the bottom. I see it uses the same version as the other on the post. I also attach the error I got below. *** Error in `/home/dj/anaconda2/envs/roms/bin/python': free(): invalid next size (fast): 0x0000556928b744e0 *** A funny thing is that I have no problem getting the data using netCDF4-python. The file size of the data is big (50-100GB. netCDF4 format), but again I was able to get the data with netCDF4-python. So I guess I need to update netCDF4-python, but I don't know how. Thanks, INSTALLED VERSIONScommit: None python: 2.7.14.final.0 python-bits: 64 OS: Linux OS-release: 4.15.0-34-generic machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: None.None xarray: 0.10.8 pandas: 0.21.0 numpy: 1.13.3 scipy: 1.0.0 netCDF4: 1.2.4 h5netcdf: None h5py: 2.7.0 Nio: None zarr: None bottleneck: None cyordereddict: None dask: 0.16.0 distributed: 1.20.0 matplotlib: 2.2.2 cartopy: 0.15.0 seaborn: 0.9.0 setuptools: 36.5.0.post20170921 pip: 18.0 conda: None pytest: None IPython: 5.4.1 sphinx: None |
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IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651 | |
422126176 | https://github.com/pydata/xarray/issues/2275#issuecomment-422126176 | https://api.github.com/repos/pydata/xarray/issues/2275 | MDEyOklzc3VlQ29tbWVudDQyMjEyNjE3Ng== | shoyer 1217238 | 2018-09-17T18:43:35Z | 2018-09-17T18:43:35Z | MEMBER | @dkobashi how did you install Python? |
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IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651 | |
422116613 | https://github.com/pydata/xarray/issues/2275#issuecomment-422116613 | https://api.github.com/repos/pydata/xarray/issues/2275 | MDEyOklzc3VlQ29tbWVudDQyMjExNjYxMw== | dkobashi 8714949 | 2018-09-17T18:13:25Z | 2018-09-17T18:13:25Z | NONE | I am having the same problem. How can I update netCDF4 library? Thanks in advance. -DJ |
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IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651 | |
404088892 | https://github.com/pydata/xarray/issues/2275#issuecomment-404088892 | https://api.github.com/repos/pydata/xarray/issues/2275 | MDEyOklzc3VlQ29tbWVudDQwNDA4ODg5Mg== | Scheibs 16919188 | 2018-07-11T08:31:53Z | 2018-07-11T08:31:53Z | NONE | I updated the netcdf4 librairie and it's works. Thanks |
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IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651 | |
404082788 | https://github.com/pydata/xarray/issues/2275#issuecomment-404082788 | https://api.github.com/repos/pydata/xarray/issues/2275 | MDEyOklzc3VlQ29tbWVudDQwNDA4Mjc4OA== | Scheibs 16919188 | 2018-07-11T08:09:32Z | 2018-07-11T08:09:32Z | NONE | This error appears immediately when i write
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IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651 | |
403954586 | https://github.com/pydata/xarray/issues/2275#issuecomment-403954586 | https://api.github.com/repos/pydata/xarray/issues/2275 | MDEyOklzc3VlQ29tbWVudDQwMzk1NDU4Ng== | shoyer 1217238 | 2018-07-10T20:26:39Z | 2018-07-10T20:26:39Z | MEMBER | Can you please share the output of My free is that this is a bug in one of the underlying libraries xarray uses for reading netCDF files. |
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IPython crash after xarray.opendataset : free():invalid next size (fast) 339909651 |
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