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  • Importing xarray fails if old version of bottleneck is installed · 5 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
583894838 https://github.com/pydata/xarray/issues/1761#issuecomment-583894838 https://api.github.com/repos/pydata/xarray/issues/1761 MDEyOklzc3VlQ29tbWVudDU4Mzg5NDgzOA== stale[bot] 26384082 2020-02-09T21:20:19Z 2020-02-09T21:20:19Z NONE

In order to maintain a list of currently relevant issues, we mark issues as stale after a period of inactivity

If this issue remains relevant, please comment here or remove the stale label; otherwise it will be marked as closed automatically

 
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   Importing xarray fails if old version of bottleneck is installed 279456192
372148226 https://github.com/pydata/xarray/issues/1761#issuecomment-372148226 https://api.github.com/repos/pydata/xarray/issues/1761 MDEyOklzc3VlQ29tbWVudDM3MjE0ODIyNg== khaeru 1634164 2018-03-11T20:53:49Z 2018-03-11T20:59:08Z NONE

~Also experiencing this, though for a different method & version of bottleneck:~

Sorry, turns out this was due to a Python 3.5 → 3.6 upgrade without re-install of pip packages. Please disregard!

$ pip list | grep -Ei "(bottleneck|xarray)" Bottleneck 1.2.1 xarray 0.10.1 $ python3 -c "import xarray" Traceback (most recent call last): File "<string>", line 1, in <module> File "/home/khaeru/.local/lib/python3.6/site-packages/xarray/__init__.py", line 10, in <module> from .core.extensions import (register_dataarray_accessor, File "/home/khaeru/.local/lib/python3.6/site-packages/xarray/core/extensions.py", line 7, in <module> from .dataarray import DataArray File "/home/khaeru/.local/lib/python3.6/site-packages/xarray/core/dataarray.py", line 16, in <module> from . import rolling File "/home/khaeru/.local/lib/python3.6/site-packages/xarray/core/rolling.py", line 377, in <module> inject_bottleneck_rolling_methods(DataArrayRolling) File "/home/khaeru/.local/lib/python3.6/site-packages/xarray/core/ops.py", line 362, in inject_bottleneck_rolling_methods f = getattr(bn, bn_name) AttributeError: module 'bottleneck' has no attribute 'move_sum'

 
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   Importing xarray fails if old version of bottleneck is installed 279456192
349771464 https://github.com/pydata/xarray/issues/1761#issuecomment-349771464 https://api.github.com/repos/pydata/xarray/issues/1761 MDEyOklzc3VlQ29tbWVudDM0OTc3MTQ2NA== aseyboldt 1882397 2017-12-06T20:54:18Z 2017-12-06T20:54:18Z NONE

@jhamman Ah, I didn't see that. In hindsight the install docs seem like an obvious place to look for info about this...

@maxim-lian That pandas solution would have saved me a bit of debugging :-) I guess another option would be to only replace functions that are present in Bottleneck. As long as they only add and never change functions this would allow xarray to use even very recent additions to bottleneck.

 
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   Importing xarray fails if old version of bottleneck is installed 279456192
349474695 https://github.com/pydata/xarray/issues/1761#issuecomment-349474695 https://api.github.com/repos/pydata/xarray/issues/1761 MDEyOklzc3VlQ29tbWVudDM0OTQ3NDY5NQ== max-sixty 5635139 2017-12-05T23:20:32Z 2017-12-05T23:20:32Z MEMBER 
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   Importing xarray fails if old version of bottleneck is installed 279456192
349472773 https://github.com/pydata/xarray/issues/1761#issuecomment-349472773 https://api.github.com/repos/pydata/xarray/issues/1761 MDEyOklzc3VlQ29tbWVudDM0OTQ3Mjc3Mw== jhamman 2443309 2017-12-05T23:11:23Z 2017-12-05T23:11:23Z MEMBER

@aseyboldt - Xarray now has a minimum version requirement for bottleneck of 1.1. This is mentioned in the docs here: http://xarray.pydata.org/en/latest/installing.html#for-accelerating-xarray

 
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   Importing xarray fails if old version of bottleneck is installed 279456192

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