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  • nicain 4
  • shoyer 4
  • chrisbarber 2
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  • dcherian 1
  • stale[bot] 1

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issue 1

  • DataArray to_dict() without converting with numpy tolist() · 15 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
1504276696 https://github.com/pydata/xarray/issues/1599#issuecomment-1504276696 https://api.github.com/repos/pydata/xarray/issues/1599 IC_kwDOAMm_X85ZqXDY dcherian 2448579 2023-04-11T23:43:34Z 2023-04-11T23:43:43Z MEMBER

Perhaps we should have array_to_list: bool instead. If False, we just preserve the underlying array type.

Then the user could do ds.as_numpy().to_dict(array_to_list=False) to always get numpy arrays as #7739

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1500552035 https://github.com/pydata/xarray/issues/1599#issuecomment-1500552035 https://api.github.com/repos/pydata/xarray/issues/1599 IC_kwDOAMm_X85ZcJtj jmccreight 12465248 2023-04-07T18:59:04Z 2023-04-07T18:59:24Z CONTRIBUTOR

The PR #7739 is available for review. @jhamman @dcherian would be my choices. i think this is pretty straight forward. I suppose the name of the kwarg being numpy_data is debatable. I based this on the discussion of numpy vs tolist above, preferring the former but acknowledging the comment that a package name as an arg is odd. Could do as_numpy or something slightly different.

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1500454096 https://github.com/pydata/xarray/issues/1599#issuecomment-1500454096 https://api.github.com/repos/pydata/xarray/issues/1599 IC_kwDOAMm_X85ZbxzQ jhamman 2443309 2023-04-07T16:47:09Z 2023-04-07T16:47:09Z MEMBER

@jmccreight - I don't think there is any specific reason this didn't get done. Still open to contributions here if you are interested.

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  DataArray to_dict() without converting with numpy tolist() 261727170
1500449963 https://github.com/pydata/xarray/issues/1599#issuecomment-1500449963 https://api.github.com/repos/pydata/xarray/issues/1599 IC_kwDOAMm_X85Zbwyr jmccreight 12465248 2023-04-07T16:41:39Z 2023-04-07T16:41:39Z CONTRIBUTOR

I'd be interested in reviving this, this is exactly what I want to achieve. It's not clear if there was some reason this never went ahead. I looked around but didnt find anything. LMK if it there's some reason not to pursue it. THanks

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527253115 https://github.com/pydata/xarray/issues/1599#issuecomment-527253115 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDUyNzI1MzExNQ== stale[bot] 26384082 2019-09-02T22:39:29Z 2019-09-02T22:39:29Z NONE

In order to maintain a list of currently relevant issues, we mark issues as stale after a period of inactivity

If this issue remains relevant, please comment here or remove the stale label; otherwise it will be marked as closed automatically

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333673706 https://github.com/pydata/xarray/issues/1599#issuecomment-333673706 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDMzMzY3MzcwNg== shoyer 1217238 2017-10-02T21:42:10Z 2017-10-02T21:42:31Z MEMBER

@nicain myself, @jhamman and/or @MaximilianR are good choices for reviewers, thanks!

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333672308 https://github.com/pydata/xarray/issues/1599#issuecomment-333672308 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDMzMzY3MjMwOA== nicain 113055 2017-10-02T21:35:50Z 2017-10-02T21:39:49Z NONE

Sweet, this is exactly what I am used to! Ill give a shot to writing a few tests later today, and make a PR. Can you suggest some core devs I can ping for a PR review? Ill ask @chrisbarber (we work together) to review, but I'd like more eyeballs on it.

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333658466 https://github.com/pydata/xarray/issues/1599#issuecomment-333658466 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDMzMzY1ODQ2Ng== shoyer 1217238 2017-10-02T20:41:05Z 2017-10-02T20:52:26Z MEMBER

We need to write a contributing guide!

But in brief: - We use the NumPy docstring convention: https://github.com/numpy/numpy/blob/master/doc/HOWTO_DOCUMENT.rst.txt - For unit tests, we use pytest, with helper functions/methods for verifying comparisons between objects. Take a look at the existing tests for examples to emulate: https://github.com/pydata/xarray/blob/25d1855e737444c156f50d1f37a67d9674a8bac5/xarray/tests/test_dataset.py#L2402

See also: https://github.com/pydata/xarray/pull/1485/files

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333636786 https://github.com/pydata/xarray/issues/1599#issuecomment-333636786 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDMzMzYzNjc4Ng== nicain 113055 2017-10-02T19:18:58Z 2017-10-02T19:18:58Z NONE

@chrisbarber

Here is my example implementation: https://github.com/nicain/xarray/blob/fa86e3d38ebf4e641cafd963a5b69a77539b931d/xarray/core/dataarray.py#L1388

@shoyer Can you point me to where to edit documentation and unit test best practices?

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  DataArray to_dict() without converting with numpy tolist() 261727170
333247131 https://github.com/pydata/xarray/issues/1599#issuecomment-333247131 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDMzMzI0NzEzMQ== chrisbarber 1530840 2017-09-29T21:48:58Z 2017-09-29T21:48:58Z NONE

@nicain, for sure. Probably best for the API's sake to stick to the simplicity of a flag.

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  DataArray to_dict() without converting with numpy tolist() 261727170
333243054 https://github.com/pydata/xarray/issues/1599#issuecomment-333243054 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDMzMzI0MzA1NA== nicain 113055 2017-09-29T21:26:17Z 2017-09-29T21:26:17Z NONE

@chrisbarber Maybe a method to_byte_dict that (in implementation) takes the output from numpy=True and walks the dict with tobytes?

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  DataArray to_dict() without converting with numpy tolist() 261727170
333240395 https://github.com/pydata/xarray/issues/1599#issuecomment-333240395 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDMzMzI0MDM5NQ== chrisbarber 1530840 2017-09-29T21:12:15Z 2017-09-29T21:12:15Z NONE

Could have a callable serializer kwarg that defaults to np.ndarray.tolist. I have a use case where I would pass in np.ndarray.tobytes for this. But then again, I could just use numpy=True or tolist=False and then walk the dict myself.

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  DataArray to_dict() without converting with numpy tolist() 261727170
333224773 https://github.com/pydata/xarray/issues/1599#issuecomment-333224773 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDMzMzIyNDc3Mw== shoyer 1217238 2017-09-29T20:00:49Z 2017-09-29T20:00:49Z MEMBER

I'll let others chime in on the API design here but yes that sounds pretty reasonable, too.

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  DataArray to_dict() without converting with numpy tolist() 261727170
333211787 https://github.com/pydata/xarray/issues/1599#issuecomment-333211787 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDMzMzIxMTc4Nw== nicain 113055 2017-09-29T19:04:24Z 2017-09-29T19:04:24Z NONE

Yeah, my thoughts exactly. I am almost done with this in my fork... numpy might be confusing for those who will see the module name when they look at it. How does a kwarg:

Python def to_dict(self, tolist=True):

sound?

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  DataArray to_dict() without converting with numpy tolist() 261727170
333209574 https://github.com/pydata/xarray/issues/1599#issuecomment-333209574 https://api.github.com/repos/pydata/xarray/issues/1599 MDEyOklzc3VlQ29tbWVudDMzMzIwOTU3NA== shoyer 1217238 2017-09-29T18:55:04Z 2017-09-29T18:55:04Z MEMBER

We could add a keyword argument to control this, e.g., numpy=True to indicate that data should be kept as NumPy arrays.

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  DataArray to_dict() without converting with numpy tolist() 261727170

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