issue_comments

It works! so on to the next issue :(

https://xray--7011.org.readthedocs.build/en/7011/user-guide/data-structures.html# has no links in the first cell.

Do you execute ipython cells that are "suppressed" (see https://github.com/pydata/xarray/blob/main/doc/user-guide/data-structures.rst). I think we "suppress" cells with imports at the top of all our doc pages.

Thanks again for all your work!

It's the second code block here and the source is

``` rst .. ipython:: python

# only one argument has the 'x' coordinate
arr[0] + 1
# both arguments have the same 'x' coordinate
arr[0] - arr[0]

```

It's rendering properly so it seems like this should just work.

So In/Out won't be expected.

The source block doesn't have In/Out but I guess the extension is receiving the output after IPython has executed the block?

I tried moving the comments around which seems to work, but we do this in a lot of places. Is it easy for you to handle it?

Ah now a different one ``` Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/sphinx_codeautolink/extension/block.py", line 213, in parse_source names = parse_names(modified_source, node) File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/sphinx_codeautolink/parse.py", line 20, in parse_names tree = ast.parse(source) File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/ast.py", line 50, in parse return compile(source, filename, mode, flags, File "<unknown>", line 638 Out[125]: ^ SyntaxError: invalid syntax

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/sphinx_codeautolink/extension/init.py", line 43, in wrapper return func(args, *kwargs) File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/sphinx_codeautolink/extension/init.py", line 135, in parse_blocks doctree.walkabout(visitor) File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/docutils/nodes.py", line 227, in walkabout if child.walkabout(visitor): File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/docutils/nodes.py", line 227, in walkabout if child.walkabout(visitor): File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/docutils/nodes.py", line 227, in walkabout if child.walkabout(visitor): File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/docutils/nodes.py", line 219, in walkabout visitor.dispatch_visit(self) File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/docutils/nodes.py", line 2021, in dispatch_visit return method(node) File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/sphinx_codeautolink/extension/block.py", line 166, in visit_literal_block return self.parse_source(node, node.get("language", None)) File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/sphinx_codeautolink/extension/block.py", line 215, in parse_source show_source = self._format_source_for_error(source, prefaces) File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/sphinx_codeautolink/extension/block.py", line 246, in _format_source_for_error guides[ix] = "block source:" IndexError: list assignment index out of range ```

Thanks for be patient with us!

We now have a different error where a error message is being treated as code: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/sphinx_codeautolink/extension/block.py", line 204, in parse_source names = parse_names(modified_source, node) File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/site-packages/sphinx_codeautolink/parse.py", line 20, in parse_names tree = ast.parse(source) File "/home/docs/checkouts/readthedocs.org/user_builds/xray/conda/7011/lib/python3.9/ast.py", line 50, in parse return compile(source, filename, mode, flags, File "<unknown>", line 638 ValueError: arguments without labels along dimension 'x' cannot be aligned because they have different dimension size(s) {2} than the size of the aligned dimension labels: 3 ^ SyntaxError: invalid syntax

@felix-hilden Looks like we still have the same issue with sphinx-codeautolink 0.12.1 pypi_0 pypi

There are a lot of these warnings: `` /home/docs/checkouts/readthedocs.org/user_builds/xray/checkouts/7011/doc/whats-new.rst:1: WARNING: invalid syntax (<unknown>, line 6) in document "whats-new" Parsed source inipython` block: block source: In [66]: ds = xray.Dataset({"x": np.arange(1000)})

          In [67]: with xray.set_options(display_width=40):
             ....:     print(ds)
             ....: 
          <xarray.Dataset>
          Dimensions:  (x: 1000)
          Coordinates:
            * x        (x) int64 0 1 2 ... 998 999
          Data variables:
              *empty*

```