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- deanpospisil · 11 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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192107773 | https://github.com/pydata/xarray/pull/731#issuecomment-192107773 | https://api.github.com/repos/pydata/xarray/issues/731 | MDEyOklzc3VlQ29tbWVudDE5MjEwNzc3Mw== | deanpospisil 15167171 | 2016-03-04T05:09:54Z | 2016-03-04T05:09:54Z | NONE | Alright, I think it's ready! |
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Add tensordot to dataarray class also add its test to test_dataarray 129286220 | |
189476736 | https://github.com/pydata/xarray/pull/731#issuecomment-189476736 | https://api.github.com/repos/pydata/xarray/issues/731 | MDEyOklzc3VlQ29tbWVudDE4OTQ3NjczNg== | deanpospisil 15167171 | 2016-02-26T20:44:05Z | 2016-02-26T20:44:05Z | NONE | Ready for review. |
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Add tensordot to dataarray class also add its test to test_dataarray 129286220 | |
183784767 | https://github.com/pydata/xarray/pull/731#issuecomment-183784767 | https://api.github.com/repos/pydata/xarray/issues/731 | MDEyOklzc3VlQ29tbWVudDE4Mzc4NDc2Nw== | deanpospisil 15167171 | 2016-02-14T01:15:49Z | 2016-02-14T01:15:49Z | NONE | Alright I think I got rebase to work, apologies for the delay. There were some comments I wasn't sure about how to integrate, I asked about them, but I figured the best way to keep moving forward was to push my best guess at what you meant. So we might need to go through one more round of comments. Thanks for being patient! |
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Add tensordot to dataarray class also add its test to test_dataarray 129286220 | |
178379984 | https://github.com/pydata/xarray/pull/731#issuecomment-178379984 | https://api.github.com/repos/pydata/xarray/issues/731 | MDEyOklzc3VlQ29tbWVudDE3ODM3OTk4NA== | deanpospisil 15167171 | 2016-02-02T05:12:33Z | 2016-02-02T05:12:33Z | NONE | Thanks! Good comments, should help with my next pull request. : ) |
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Add tensordot to dataarray class also add its test to test_dataarray 129286220 | |
177039255 | https://github.com/pydata/xarray/issues/735#issuecomment-177039255 | https://api.github.com/repos/pydata/xarray/issues/735 | MDEyOklzc3VlQ29tbWVudDE3NzAzOTI1NQ== | deanpospisil 15167171 | 2016-01-30T01:18:08Z | 2016-01-30T01:26:34Z | NONE | Note I mis-typed
When using large dask arrays that operation tended to fill up ram. I'm not sure why, but it made the dask objects very large, I don't have a good understanding of how those graphs are constructed so I was unable to track down the problem. I tried out
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Implement vnorm for xarray with dask support 129919128 | |
176955192 | https://github.com/pydata/xarray/pull/731#issuecomment-176955192 | https://api.github.com/repos/pydata/xarray/issues/731 | MDEyOklzc3VlQ29tbWVudDE3Njk1NTE5Mg== | deanpospisil 15167171 | 2016-01-29T20:29:15Z | 2016-01-29T20:29:15Z | NONE |
Yeah I'm going to go for omitting the dims entirely for now, I think it makes the function easy to call, and really covers what I imagine most people would use the function for, getting the relationship between two DataArrays along their common dimensions. Thats all I'm going to use it for.
Yeah that makes sense. |
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Add tensordot to dataarray class also add its test to test_dataarray 129286220 | |
176571428 | https://github.com/pydata/xarray/pull/731#issuecomment-176571428 | https://api.github.com/repos/pydata/xarray/issues/731 | MDEyOklzc3VlQ29tbWVudDE3NjU3MTQyOA== | deanpospisil 15167171 | 2016-01-29T04:44:25Z | 2016-01-29T04:45:45Z | NONE | I've implemented all your comments, except:
1. In the dask test I'm having a little trouble with:
2 Your comment:
3 Need to figure out how to edit the docs. And I was thinking: The default (when no dims arg is given) should be to tensordot over all shared dims between DataArrays. And it should prevent you from not summing over all shared dims, since that will return a DataArray with repeated labels. I think it would be rare for people to want to tensor dot over different dimensions. Thanks for all your help getting me going! |
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Add tensordot to dataarray class also add its test to test_dataarray 129286220 | |
175905067 | https://github.com/pydata/xarray/pull/731#issuecomment-175905067 | https://api.github.com/repos/pydata/xarray/issues/731 | MDEyOklzc3VlQ29tbWVudDE3NTkwNTA2Nw== | deanpospisil 15167171 | 2016-01-27T23:07:37Z | 2016-01-27T23:07:37Z | NONE | It seems in both unsuccesful cases it was trying to import dask and failed, I can't quite figure out what I could have changed to prevent dask from importing: ```
xarray/core/dataarray.py:569: in chunk ds = self._to_temp_dataset().chunk(chunks) ``` ``` try: from dask.base import tokenize except ImportError:
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Add tensordot to dataarray class also add its test to test_dataarray 129286220 | |
175378477 | https://github.com/pydata/xarray/issues/723#issuecomment-175378477 | https://api.github.com/repos/pydata/xarray/issues/723 | MDEyOklzc3VlQ29tbWVudDE3NTM3ODQ3Nw== | deanpospisil 15167171 | 2016-01-27T03:59:46Z | 2016-01-27T04:00:24Z | NONE | Also that einsum does seem pretty ideal. I'll see if I can get it running in dask, so we can port it over here. |
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Implement tensordot for xarray with dask support 128687346 | |
175378292 | https://github.com/pydata/xarray/issues/723#issuecomment-175378292 | https://api.github.com/repos/pydata/xarray/issues/723 | MDEyOklzc3VlQ29tbWVudDE3NTM3ODI5Mg== | deanpospisil 15167171 | 2016-01-27T03:58:31Z | 2016-01-27T03:58:31Z | NONE | I wasn't sure where the best place to put the def would be. Currently I have been running it from the xarray class:
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Implement tensordot for xarray with dask support 128687346 | |
175175494 | https://github.com/pydata/xarray/issues/723#issuecomment-175175494 | https://api.github.com/repos/pydata/xarray/issues/723 | MDEyOklzc3VlQ29tbWVudDE3NTE3NTQ5NA== | deanpospisil 15167171 | 2016-01-26T18:53:02Z | 2016-01-26T18:53:02Z | NONE | Looks like it can perform tensor dot for dask and straight xarrays! But apparently dask has not implemented tensordot with multiple axes arguments, and it also does not work performing a tensor dot between a dask xarray and an xarray. Neither of these cases worries me too much, hopefully they don't worry you. ``` python from xarray import align, DataArray note: using private imports (e.g., from xarray.core) is definitely discouraged!this is not guaranteed to work in future versions of xarrayfrom xarray.core.ops import _dask_or_eager_func def tensordot(a, b, dims): if not (isinstance(a, DataArray) and isinstance(b, DataArray)): raise ValueError
import xarray as xr import numpy as np x_trans = np.linspace(-3,3,6) y_trans = np.linspace(-3,3,5) imgID = range(4) da = xr.DataArray( np.ones((6,5,4)), coords = [ x_trans, y_trans, imgID ], dims = ['x_trans', 'y_trans', 'imgID'] ) models = range(20) dm = xr.DataArray( np.ones(( 20 , 5, 4 )), coords = [ models, y_trans, imgID], dims = [ 'models', 'y_trans', 'imgID' ] ) xarray tensordotproj_a = tensordot(da, dm, 'imgID') dask xarray tensor dotda = da.chunk() dm = dm.chunk() proj_b = tensordot(da, dm, 'imgID') errorsmultiple dimsproj_c = tensordot(da, dm, ['imgID', 'y_trans']) mixed typesda = da.chunk() dm = dm.load() proj_d = tensordot(da, dm, 'imgID') ``` |
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Implement tensordot for xarray with dask support 128687346 |
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