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- HDF error when trying to write Dataset read with rasterio to NetCDF · 8 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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1468827469 | https://github.com/pydata/xarray/issues/2535#issuecomment-1468827469 | https://api.github.com/repos/pydata/xarray/issues/2535 | IC_kwDOAMm_X85XjIdN | kmuehlbauer 5821660 | 2023-03-14T20:53:28Z | 2023-03-14T20:53:28Z | MEMBER | Just a heads up, I can't reproduce this with latest packages from conda-forge for neither for |
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HDF error when trying to write Dataset read with rasterio to NetCDF 376389539 | |
499894324 | https://github.com/pydata/xarray/issues/2535#issuecomment-499894324 | https://api.github.com/repos/pydata/xarray/issues/2535 | MDEyOklzc3VlQ29tbWVudDQ5OTg5NDMyNA== | dcherian 2448579 | 2019-06-07T13:55:36Z | 2019-06-07T13:55:36Z | MEMBER | HDF error usually means a corrupt file. Does ncdump -h work on your file? I've found that sometimes ncdump -h will succeed but there'll still be some corrupt data which will result in an error when you try to load variable values |
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HDF error when trying to write Dataset read with rasterio to NetCDF 376389539 | |
445944261 | https://github.com/pydata/xarray/issues/2535#issuecomment-445944261 | https://api.github.com/repos/pydata/xarray/issues/2535 | MDEyOklzc3VlQ29tbWVudDQ0NTk0NDI2MQ== | shoyer 1217238 | 2018-12-10T19:37:02Z | 2018-12-10T19:37:02Z | MEMBER | This looks like a binary incompatibility issue with wheels for rasterio and netCDF4 on PyPI. Good alternatives (for now) would be building from source or using conda-forge. |
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HDF error when trying to write Dataset read with rasterio to NetCDF 376389539 | |
436257224 | https://github.com/pydata/xarray/issues/2535#issuecomment-436257224 | https://api.github.com/repos/pydata/xarray/issues/2535 | MDEyOklzc3VlQ29tbWVudDQzNjI1NzIyNA== | fmaussion 10050469 | 2018-11-06T13:45:34Z | 2018-11-06T13:45:34Z | MEMBER | I can reproduce this on my machine - also linux. This is going to be hard to track down though. |
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HDF error when trying to write Dataset read with rasterio to NetCDF 376389539 | |
436254011 | https://github.com/pydata/xarray/issues/2535#issuecomment-436254011 | https://api.github.com/repos/pydata/xarray/issues/2535 | MDEyOklzc3VlQ29tbWVudDQzNjI1NDAxMQ== | jhamman 2443309 | 2018-11-06T13:34:30Z | 2018-11-06T13:34:30Z | MEMBER | Is this the same error you get with xarray/master? |
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HDF error when trying to write Dataset read with rasterio to NetCDF 376389539 | |
436132832 | https://github.com/pydata/xarray/issues/2535#issuecomment-436132832 | https://api.github.com/repos/pydata/xarray/issues/2535 | MDEyOklzc3VlQ29tbWVudDQzNjEzMjgzMg== | shoyer 1217238 | 2018-11-06T05:09:37Z | 2018-11-06T05:09:37Z | MEMBER | Exactly what error message do you see? |
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HDF error when trying to write Dataset read with rasterio to NetCDF 376389539 | |
436054649 | https://github.com/pydata/xarray/issues/2535#issuecomment-436054649 | https://api.github.com/repos/pydata/xarray/issues/2535 | MDEyOklzc3VlQ29tbWVudDQzNjA1NDY0OQ== | jhamman 2443309 | 2018-11-05T22:11:11Z | 2018-11-05T22:11:36Z | MEMBER | Interesting. I'm not seeing any difference when using scipy or netcdf4 or h5netcdf. (by the way, thank you for the reproducible example) |
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HDF error when trying to write Dataset read with rasterio to NetCDF 376389539 | |
436017050 | https://github.com/pydata/xarray/issues/2535#issuecomment-436017050 | https://api.github.com/repos/pydata/xarray/issues/2535 | MDEyOklzc3VlQ29tbWVudDQzNjAxNzA1MA== | jhamman 2443309 | 2018-11-05T20:07:29Z | 2018-11-05T20:07:29Z | MEMBER | @loicdtx - thanks for the report. I just tried this using xarray master and didn't get an error. So, you could try that and see if that works. Since our last release, we've had a fairly significant refactor of the IO backends in xarray. |
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HDF error when trying to write Dataset read with rasterio to NetCDF 376389539 |
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