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issues: 376389539

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id node_id number title user state locked assignee milestone comments created_at updated_at closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
376389539 MDU6SXNzdWUzNzYzODk1Mzk= 2535 HDF error when trying to write Dataset read with rasterio to NetCDF 5638829 closed 0     17 2018-11-01T13:21:15Z 2023-03-29T16:01:26Z 2023-03-29T16:01:26Z NONE      

I'm getting an HDF error when trying to write a Dataset read from GeoTiff (rasterio backend) to NetCDF. See reproducible example below:

```python import urllib.request import tempfile import os

import xarray as xr

path = tempfile.gettempdir() url = 'https://earthexplorer.usgs.gov/browse/gisready/landsat_8/LC08_L1TP_026047_20180110_20180119_01_T1.zip' filename = os.path.join(path, url.split('/')[-1]) nc_name = os.path.join(path, 'landsat_rgb.nc')

Download file if not exist (11 Mb)

if not os.path.isfile(filename): urllib.request.urlretrieve(url, filename)

Read rgb file using rasterio backend

rgb_name = '/'.join(['/vsizip', filename, os.path.basename(filename).split('.')[-2] + '.tif']) ds = xr.open_rasterio(rgb_name) ds = ds.to_dataset('band').rename({1:'blue', 2:'green', 3:'red'}) print(ds)

<xarray.Dataset>

Dimensions: (x: 7611, y: 7761)

Coordinates:

* y (y) float64 2.193e+06 2.193e+06 2.193e+06 ... 1.961e+06 1.960e+06

* x (x) float64 3.732e+05 3.732e+05 3.733e+05 ... 6.015e+05 6.015e+05

Data variables:

blue (y, x) uint8 ...

red (y, x) uint8 ...

green (y, x) uint8 ...

Attributes:

transform: (30.0, 0.0, 373185.0, 0.0, -30.0, 2193315.0)

crs: +init=epsg:32614

res: (30.0, 30.0)

is_tiled: 1

nodatavals: (nan, nan, nan)

Write to netcdf

ds.to_netcdf(nc_name)

```

Output of xr.show_versions()

python -c "import xarray as xr; xr.show_versions()" INSTALLED VERSIONS ------------------ commit: None python: 3.6.5.final.0 python-bits: 64 OS: Linux OS-release: 4.15.0-36-generic machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: en_US.UTF-8 xarray: 0.10.9 pandas: 0.23.4 numpy: 1.15.3 scipy: None netCDF4: 1.4.2 h5netcdf: None h5py: None Nio: None zarr: 2.2.0 cftime: 1.0.2.1 PseudonetCDF: None rasterio: 1.0.9 iris: None bottleneck: None cyordereddict: None dask: 0.20.0 distributed: None matplotlib: None cartopy: None seaborn: None setuptools: 40.5.0 pip: 18.1 conda: None pytest: None IPython: 7.1.1 sphinx: None
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  completed 13221727 issue

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