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  • fix rasterio chunking with s3 datasets · 11 ✖

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360072572 https://github.com/pydata/xarray/pull/1817#issuecomment-360072572 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM2MDA3MjU3Mg== fmaussion 10050469 2018-01-24T09:33:07Z 2018-01-24T09:33:07Z MEMBER

@rabernat no problem, will go back the rasterio tests soon 

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   fix rasterio chunking with s3 datasets 287569331
359892573 https://github.com/pydata/xarray/pull/1817#issuecomment-359892573 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM1OTg5MjU3Mw== rabernat 1197350 2018-01-23T18:54:24Z 2018-01-23T18:54:24Z MEMBER

@fmaussion - so sorry I accidentally deleted your tests. I was just rushing to resolve the conflicts so as not to hold up the other PRs. I hope this does not cause too much inconvenience.

 
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   fix rasterio chunking with s3 datasets 287569331
359849232 https://github.com/pydata/xarray/pull/1817#issuecomment-359849232 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM1OTg0OTIzMg== shoyer 1217238 2018-01-23T16:33:46Z 2018-01-23T16:33:46Z MEMBER

This looks good so let's get it in!

 
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   fix rasterio chunking with s3 datasets 287569331
359848928 https://github.com/pydata/xarray/pull/1817#issuecomment-359848928 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM1OTg0ODkyOA== shoyer 1217238 2018-01-23T16:32:56Z 2018-01-23T16:32:56Z MEMBER

@rabernat @fmaussion it's fine to merge your own PR once it's been reviewed & approved by another core developer.

 
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   fix rasterio chunking with s3 datasets 287569331
359827458 https://github.com/pydata/xarray/pull/1817#issuecomment-359827458 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM1OTgyNzQ1OA== fmaussion 10050469 2018-01-23T15:32:15Z 2018-01-23T15:32:15Z MEMBER

test_nodata and test_nodata_missing are tests which were added in https://github.com/pydata/xarray/pull/1740, they shouldn't be deleted by your PR. It's fine if you don't refactorize them (I'll need to have a look at all the tests anyway once all conflicting PRs are merged, see https://github.com/pydata/xarray/issues/1843)

 
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   fix rasterio chunking with s3 datasets 287569331
359814915 https://github.com/pydata/xarray/pull/1817#issuecomment-359814915 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM1OTgxNDkxNQ== rabernat 1197350 2018-01-23T14:54:07Z 2018-01-23T14:54:07Z MEMBER

I resolved conflicts. LGTM before it gets stale again!

Is it bad form to merge my own PR?

 
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   fix rasterio chunking with s3 datasets 287569331
358707269 https://github.com/pydata/xarray/pull/1817#issuecomment-358707269 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM1ODcwNzI2OQ== shoyer 1217238 2018-01-18T16:47:50Z 2018-01-18T16:47:50Z MEMBER

@rabernat this now has some conflicts to resolve. Can you fix those and merge this? Thanks!

 
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   fix rasterio chunking with s3 datasets 287569331
357457030 https://github.com/pydata/xarray/pull/1817#issuecomment-357457030 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM1NzQ1NzAzMA== fmaussion 10050469 2018-01-13T18:44:37Z 2018-01-13T18:44:37Z MEMBER

https://github.com/pydata/xarray/pull/1740 is OK since the tests are still missing. My PR is a bit more problematic, but I can handle it. I would favor pushing yours forward now and I'll rebase my PR on top of it.

 
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   fix rasterio chunking with s3 datasets 287569331
357456847 https://github.com/pydata/xarray/pull/1817#issuecomment-357456847 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM1NzQ1Njg0Nw== rabernat 1197350 2018-01-13T18:41:46Z 2018-01-13T18:41:46Z MEMBER

this will mess with #1712 and #1740 quite a bit

I probably should have paid more attention to those PR's. My apologies.

Here is how I ended up refactoring the tests. I had to write a new test to catch the bug I discovered. I looked at the existing tests for guidance and saw lots of boilerplate. So rather than copying the boilerplate, I refactored it.

Let me know how I can help resolve this conflicts this may cause with the other open PRs. 

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   fix rasterio chunking with s3 datasets 287569331
357450408 https://github.com/pydata/xarray/pull/1817#issuecomment-357450408 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM1NzQ1MDQwOA== rabernat 1197350 2018-01-13T17:08:50Z 2018-01-13T17:08:50Z MEMBER

I also refactored the rasterio test suite to eliminate a lot of boilerplate dataset creation and added tests for network urls. I'm not a geotiff expert, so please let me know if I have done anything silly.

 
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   fix rasterio chunking with s3 datasets 287569331
356799541 https://github.com/pydata/xarray/pull/1817#issuecomment-356799541 https://api.github.com/repos/pydata/xarray/issues/1817 MDEyOklzc3VlQ29tbWVudDM1Njc5OTU0MQ== shoyer 1217238 2018-01-11T01:56:53Z 2018-01-11T01:57:05Z MEMBER

You can test this by mocking os.path.getmtime, e.g., ```python from unittest import mock # but note that we use a special import for mock in xarray

with mock.patch('os.path.getmtime', side_effect=RuntimeError): os.path.getmtime('fooasdf.txt') ```

 
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   fix rasterio chunking with s3 datasets 287569331

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