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- dask compute on reduction failes with ValueError · 5 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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349537178 | https://github.com/pydata/xarray/issues/1759#issuecomment-349537178 | https://api.github.com/repos/pydata/xarray/issues/1759 | MDEyOklzc3VlQ29tbWVudDM0OTUzNzE3OA== | shoyer 1217238 | 2017-12-06T05:20:29Z | 2017-12-06T05:20:29Z | MEMBER | OK, I figured it out. We set I don't really have better ideas for how to test this, but it is reassuring that |
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dask compute on reduction failes with ValueError 279161550 | |
349391827 | https://github.com/pydata/xarray/issues/1759#issuecomment-349391827 | https://api.github.com/repos/pydata/xarray/issues/1759 | MDEyOklzc3VlQ29tbWVudDM0OTM5MTgyNw== | shoyer 1217238 | 2017-12-05T18:13:18Z | 2017-12-05T18:13:18Z | MEMBER | I can remove all the mock related code from |
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dask compute on reduction failes with ValueError 279161550 | |
349149824 | https://github.com/pydata/xarray/issues/1759#issuecomment-349149824 | https://api.github.com/repos/pydata/xarray/issues/1759 | MDEyOklzc3VlQ29tbWVudDM0OTE0OTgyNA== | shoyer 1217238 | 2017-12-05T00:04:46Z | 2017-12-05T00:04:46Z | MEMBER |
I still don't understand what actually went wrong here. It looks like we have test coverage for calling compute on an xarray.DataArray (see In [6]: import numpy as np In [7]: import dask In [8]: import dask.array as da In [9]: import toolz ...: x = xr.Variable('x', da.arange(8, chunks=(4,))) ...: y = xr.Variable('y', da.arange(8, chunks=(4,)) * 2) ...: data = da.random.random((8, 8), chunks=(4, 4)) + 1 ...: array = xr.DataArray(data, dims=['x', 'y']) ...: array.coords['xx'] = x ...: array.coords['yy'] = y ...: ...: assert dict(array.dask_graph()) == toolz.merge(data.dask_graph(), ...: x.dask_graph(), ...: y.dask_graph()) ...: ...: (array2,) = dask.compute(array) ...: ValueError Traceback (most recent call last) <ipython-input-9-4aaee405bed6> in <module>() 11 y.dask_graph()) 12 ---> 13 (array2,) = dask.compute(array) ~/conda/envs/xarray-py36/lib/python3.6/site-packages/dask/base.py in compute(args, kwargs) 334 results_iter = iter(results) 335 return tuple(a if f is None else f(next(results_iter), a) --> 336 for f, a in postcomputes) 337 338 ~/conda/envs/xarray-py36/lib/python3.6/site-packages/dask/base.py in <genexpr>(.0) 334 results_iter = iter(results) 335 return tuple(a if f is None else f(next(results_iter), *a) --> 336 for f, a in postcomputes) 337 338 ~/dev/xarray/xarray/core/dataarray.py in _dask_finalize(results, func, args, name) 607 @staticmethod 608 def _dask_finalize(results, func, args, name): --> 609 ds = func(results, *args) 610 variable = ds._variables.pop(_THIS_ARRAY) 611 coords = ds._variables ~/dev/xarray/xarray/core/dataset.py in _dask_postcompute(results, info, args) 551 func, args2 = v 552 r = results2.pop() --> 553 result = func(r, args2) 554 else: 555 result = v ~/dev/xarray/xarray/core/variable.py in _dask_finalize(results, array_func, array_args, dims, attrs, encoding) 389 results = {k: v for k, v in results.items() if k[0] == name} # cull 390 data = array_func(results, *array_args) --> 391 return Variable(dims, data, attrs=attrs, encoding=encoding) 392 393 @property ~/dev/xarray/xarray/core/variable.py in init(self, dims, data, attrs, encoding, fastpath) 267 """ 268 self._data = as_compatible_data(data, fastpath=fastpath) --> 269 self._dims = self._parse_dimensions(dims) 270 self._attrs = None 271 self._encoding = None ~/dev/xarray/xarray/core/variable.py in _parse_dimensions(self, dims) 431 raise ValueError('dimensions %s must have the same length as the ' 432 'number of data dimensions, ndim=%s' --> 433 % (dims, self.ndim)) 434 return dims 435 ValueError: dimensions ('x',) must have the same length as the number of data dimensions, ndim=0 ``` |
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dask compute on reduction failes with ValueError 279161550 | |
349148049 | https://github.com/pydata/xarray/issues/1759#issuecomment-349148049 | https://api.github.com/repos/pydata/xarray/issues/1759 | MDEyOklzc3VlQ29tbWVudDM0OTE0ODA0OQ== | shoyer 1217238 | 2017-12-04T23:55:28Z | 2017-12-04T23:55:28Z | MEMBER |
Yes, this seems like a small win. |
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dask compute on reduction failes with ValueError 279161550 | |
349134458 | https://github.com/pydata/xarray/issues/1759#issuecomment-349134458 | https://api.github.com/repos/pydata/xarray/issues/1759 | MDEyOklzc3VlQ29tbWVudDM0OTEzNDQ1OA== | shoyer 1217238 | 2017-12-04T22:54:47Z | 2017-12-04T22:54:47Z | MEMBER | I don't think you're doing anything wrong. This looks like a bug related to @mrocklin's recent addition of dask duck methods for xarray. Here are the values being passed to It seems like something is going wrong on the dask side: |
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dask compute on reduction failes with ValueError 279161550 |
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