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  • Error when using engine='scipy' reading CM2.6 ocean output · 4 ✖

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id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
456593474 https://github.com/pydata/xarray/issues/1704#issuecomment-456593474 https://api.github.com/repos/pydata/xarray/issues/1704 MDEyOklzc3VlQ29tbWVudDQ1NjU5MzQ3NA== dcherian 2448579 2019-01-22T22:48:21Z 2019-01-22T22:48:21Z MEMBER

Closing in favour of #1823 

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   Error when using engine='scipy' reading CM2.6 ocean output 272415954
345919689 https://github.com/pydata/xarray/issues/1704#issuecomment-345919689 https://api.github.com/repos/pydata/xarray/issues/1704 MDEyOklzc3VlQ29tbWVudDM0NTkxOTY4OQ== jhamman 2443309 2017-11-21T05:17:14Z 2017-11-21T05:17:14Z MEMBER

@jbusecke -

... would it be possible to implement a check for such errors that displays a warning?

In your case, what would that have looked like? Many users have actually requested that xarray provide a more streamlined reader function that does less checking. Perhaps it would have been useful for you to have xarray raise an error when it encountered files that weren't consistent (either in the variable, dimensions, or coordinates)? 

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   Error when using engine='scipy' reading CM2.6 ocean output 272415954
343352694 https://github.com/pydata/xarray/issues/1704#issuecomment-343352694 https://api.github.com/repos/pydata/xarray/issues/1704 MDEyOklzc3VlQ29tbWVudDM0MzM1MjY5NA== shoyer 1217238 2017-11-10T02:02:51Z 2017-11-10T02:02:51Z MEMBER

Can you figure out which variable name it's erroring on? Try dropping into a debugger (e.g., %debug% in IPython).

It is not immediately obvious to me what the issue is with this file, but I suspect this is probably a SciPy issue given that scipy.io.netcdf_file() cannot even open it. Access to the file would help because then I can use a debugger to see exactly what went wrong.

 
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   Error when using engine='scipy' reading CM2.6 ocean output 272415954
343030828 https://github.com/pydata/xarray/issues/1704#issuecomment-343030828 https://api.github.com/repos/pydata/xarray/issues/1704 MDEyOklzc3VlQ29tbWVudDM0MzAzMDgyOA== shoyer 1217238 2017-11-09T02:46:09Z 2017-11-09T02:46:09Z MEMBER

Can you share an example file?

Note that there are some performance improvements for open_mfdataset in the next version of xarray, which you could test out with the release candidate if you like.

 
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   Error when using engine='scipy' reading CM2.6 ocean output 272415954

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