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issue 1

  • xr.concat loses coordinate dtype information with recarrays in 0.9 · 6 ✖

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  • MEMBER · 6 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
1400623411 https://github.com/pydata/xarray/issues/1434#issuecomment-1400623411 https://api.github.com/repos/pydata/xarray/issues/1434 IC_kwDOAMm_X85Te9Ez dcherian 2448579 2023-01-23T16:22:15Z 2023-01-23T16:22:15Z MEMBER

We should add a test for this then.

 
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   xr.concat loses coordinate dtype information with recarrays in 0.9 232350436
1400113151 https://github.com/pydata/xarray/issues/1434#issuecomment-1400113151 https://api.github.com/repos/pydata/xarray/issues/1434 IC_kwDOAMm_X85TdAf_ keewis 14808389 2023-01-23T10:23:48Z 2023-01-23T10:23:48Z MEMBER

Works for me, as well, so I'm closing this.

 
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   xr.concat loses coordinate dtype information with recarrays in 0.9 232350436
1399895042 https://github.com/pydata/xarray/issues/1434#issuecomment-1399895042 https://api.github.com/repos/pydata/xarray/issues/1434 IC_kwDOAMm_X85TcLQC kmuehlbauer 5821660 2023-01-23T07:05:29Z 2023-01-23T07:05:29Z MEMBER

Works for me in latest main. #1438 might be closed, too.

 
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   xr.concat loses coordinate dtype information with recarrays in 0.9 232350436
388660444 https://github.com/pydata/xarray/issues/1434#issuecomment-388660444 https://api.github.com/repos/pydata/xarray/issues/1434 MDEyOklzc3VlQ29tbWVudDM4ODY2MDQ0NA== shoyer 1217238 2018-05-13T22:27:28Z 2018-05-13T22:27:28Z MEMBER

@ctw I'm not sure why #1438 was closed (I think that was by mistake), but we would still need a fix along those lines to fix this issue.

 
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   xr.concat loses coordinate dtype information with recarrays in 0.9 232350436
305036355 https://github.com/pydata/xarray/issues/1434#issuecomment-305036355 https://api.github.com/repos/pydata/xarray/issues/1434 MDEyOklzc3VlQ29tbWVudDMwNTAzNjM1NQ== shoyer 1217238 2017-05-30T23:20:14Z 2017-05-30T23:20:14Z MEMBER

Is there an advantage to using pandas for concatenation over numpy.concatenate?

Yes, otherwise we loose pandas (d)type information. For example, a MultiIndex gets turned into a dtype=object array of tuples.

 
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   xr.concat loses coordinate dtype information with recarrays in 0.9 232350436
305034234 https://github.com/pydata/xarray/issues/1434#issuecomment-305034234 https://api.github.com/repos/pydata/xarray/issues/1434 MDEyOklzc3VlQ29tbWVudDMwNTAzNDIzNA== shoyer 1217238 2017-05-30T23:08:48Z 2017-05-30T23:08:48Z MEMBER

Thanks for the report, I'm marking this as a bug.

The issue is with these lines in IndexVariable.concat. We defer to pandas for concatenating coordinate labels, but pandas doesn't handle structured dtypes properly (it converts them to dtype=object). This is part of why we have PandasIndexAdapter.

It seems like we now need some more complex logic for toggling between pandas Index.append() and numpy.concatenate, based on the Index dtypes.

 
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   xr.concat loses coordinate dtype information with recarrays in 0.9 232350436

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