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- jaicher · 6 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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992878363 | https://github.com/pydata/xarray/issues/6062#issuecomment-992878363 | https://api.github.com/repos/pydata/xarray/issues/6062 | IC_kwDOAMm_X847Lh8b | jaicher 4666753 | 2021-12-13T20:38:37Z | 2021-12-14T04:43:21Z | CONTRIBUTOR | I have matplotlib installed. Here's the output of Output of <tt>xr.show_versions()</tt>INSTALLED VERSIONS ------------------ commit: None python: 3.8.12 | packaged by conda-forge | (default, Oct 12 2021, 21:59:51) [GCC 9.4.0] python-bits: 64 OS: Linux OS-release: 5.4.72-microsoft-standard-WSL2 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: C.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: 1.12.1 libnetcdf: 4.8.1 xarray: 0.19.0 pandas: 1.3.4 numpy: 1.21.4 scipy: 1.7.3 netCDF4: 1.5.8 pydap: None h5netcdf: None h5py: 2.10.0 Nio: None zarr: 2.10.3 cftime: 1.5.1 nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: 1.3.2 dask: 2021.11.2 distributed: 2021.11.2 matplotlib: 3.5.1 cartopy: None seaborn: 0.11.2 numbagg: None pint: None setuptools: 59.4.0 pip: 21.3.1 conda: None pytest: None IPython: 7.30.1 sphinx: 4.3.1By "no display available", I meant on a headless server (e.g. WSL2, compute node on slurm cluster). Digging more into this, this is related to matplotlib/matplotlib#17396 (matplotlib >= 3.4):
I experience hanging because my WSL2 setup sets DISPLAY to reference an X11 server that isn't always running. Since the X11 server is on Windows, the DISPLAY refers to a remote address. Apparently, X11 doesn't give up when it isn't able to connect to a remote X11 server, and, so it hangs on that command. That is for matplotlib >= 3.4. For matplotlib = 3.3 (which is still less than a year old) and xarray=0.20, I get:
``` qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found. This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem. Available platform plugins are: eglfs, minimal, minimalegl, offscreen, vnc, webgl, xcb. Aborted ``` This will become a little bit less of an issue when we set the minimum version of matplotlib to 3.4. However, I still think we should revert PR #5794 (PR #6064). It doesn't fix any bug. Before matplotlib >= 3.4, the common-knowledge I had previously seen from writing scripts with headless-use of matplotlib was that we shouldn't import |
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Import hangs when matplotlib installed but no display available 1076377174 | |
990578151 | https://github.com/pydata/xarray/pull/6064#issuecomment-990578151 | https://api.github.com/repos/pydata/xarray/issues/6064 | IC_kwDOAMm_X847CwXn | jaicher 4666753 | 2021-12-10T03:27:19Z | 2021-12-10T03:29:55Z | CONTRIBUTOR | Wasn't sure what to do about the |
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Revert "Single matplotlib import" 1076384122 | |
949875448 | https://github.com/pydata/xarray/issues/5883#issuecomment-949875448 | https://api.github.com/repos/pydata/xarray/issues/5883 | IC_kwDOAMm_X844nfL4 | jaicher 4666753 | 2021-10-22T18:37:06Z | 2021-10-22T18:37:06Z | CONTRIBUTOR | I see the issue now. Closing the issue, but in case anyone else is figuring this out:
In summary, main takeaways are: - check that your chunking aligns with your parallel writes using regions. - dimension coordinates cannot be chunked in zarr (to my knowledge, at least), and so, they do not support parallel writes. Write these either before or after the parallel writes. Sorry for opening this issue that wasn't a real issue! |
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Failing parallel writes to_zarr with regions parameter? 1033142897 | |
582987048 | https://github.com/pydata/xarray/pull/3752#issuecomment-582987048 | https://api.github.com/repos/pydata/xarray/issues/3752 | MDEyOklzc3VlQ29tbWVudDU4Mjk4NzA0OA== | jaicher 4666753 | 2020-02-06T16:25:54Z | 2020-02-06T16:25:54Z | CONTRIBUTOR | We have different test failures than last time. They appear to be happening in tests with time indexes this time. I suspect these failures are again unrelated to the pull request. |
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Fix swap_dims() index names (issue #3748) 559958918 | |
582108728 | https://github.com/pydata/xarray/pull/3752#issuecomment-582108728 | https://api.github.com/repos/pydata/xarray/issues/3752 | MDEyOklzc3VlQ29tbWVudDU4MjEwODcyOA== | jaicher 4666753 | 2020-02-04T20:50:34Z | 2020-02-04T20:50:34Z | CONTRIBUTOR | The 4 pytest failures per check are taking place in |
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Fix swap_dims() index names (issue #3748) 559958918 | |
582102600 | https://github.com/pydata/xarray/pull/3752#issuecomment-582102600 | https://api.github.com/repos/pydata/xarray/issues/3752 | MDEyOklzc3VlQ29tbWVudDU4MjEwMjYwMA== | jaicher 4666753 | 2020-02-04T20:34:55Z | 2020-02-04T20:34:55Z | CONTRIBUTOR | I added a simple test, but not sure it is correctly set up. I wasn't sure about how pytest fixtures worked, so I didn't know if I needed/how to set up a new fixture to test the bugfix. |
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Fix swap_dims() index names (issue #3748) 559958918 |
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