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- duncanwp · 14 ✖
id | html_url | issue_url | node_id | user | created_at | updated_at ▲ | author_association | body | reactions | performed_via_github_app | issue |
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368461033 | https://github.com/pydata/xarray/issues/1877#issuecomment-368461033 | https://api.github.com/repos/pydata/xarray/issues/1877 | MDEyOklzc3VlQ29tbWVudDM2ODQ2MTAzMw== | duncanwp 3169620 | 2018-02-26T10:46:47Z | 2018-02-26T10:46:47Z | CONTRIBUTOR | It's OK - I think @shoyer is right - it shouldn't silently promote the type, and the error message is clear. Thanks |
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TypeError for NetCDF float16 output 293445250 | |
356327572 | https://github.com/pydata/xarray/issues/475#issuecomment-356327572 | https://api.github.com/repos/pydata/xarray/issues/475 | MDEyOklzc3VlQ29tbWVudDM1NjMyNzU3Mg== | duncanwp 3169620 | 2018-01-09T16:01:16Z | 2018-01-09T16:01:16Z | CONTRIBUTOR | Further to the comment I made in a related issue #486 comment I've now taken a simplified version of the collocation approach in CIS and created a stand-alone package which works with xarray objects: https://github.com/cistools/collocate. This works essentially the same as the nice example shown in the above blog, with some key differences: * The points within a certain distance (tolerance) of each sample point can be aggregated or selected from using the built-in kernels, allowing fast operations over many sample points. * The horizontal distance constraint can be supplemented with constraints in other dimensions (such as time or altitude). * The transform from Cartesian to Eucledian coordinates is not needed as we use our own KD-Tree implementation which builds haversine rectangles. Depending on use cases this isn't always the fastest approach, but it does sidestep some nasty dateline issues. * In the case where only the nearest points in the horizontal is needed the collocation falls back the fast single point lookup. * The KD-Tree implementation is (relatively well) separated so could easily be switched out for cKDtree or pyresample implementations * There are a some tests too, although no docs yet. I'll try and put together a notebook building on the above blogpost so that the similarities and differences are a bit clearer. I'm not familiar enough with xarray indexing to be able to say how well this would fit inside xarray, but hopefully it will be useful before we're able to crack KD-MultiIndexes! |
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API design for pointwise indexing 95114700 | |
353014435 | https://github.com/pydata/xarray/pull/1750#issuecomment-353014435 | https://api.github.com/repos/pydata/xarray/issues/1750 | MDEyOklzc3VlQ29tbWVudDM1MzAxNDQzNQ== | duncanwp 3169620 | 2017-12-20T09:41:31Z | 2017-12-20T09:41:31Z | CONTRIBUTOR | This looks good to go now - thanks for all your help! |
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xarray to and from Iris 278286073 | |
352884720 | https://github.com/pydata/xarray/pull/1750#issuecomment-352884720 | https://api.github.com/repos/pydata/xarray/issues/1750 | MDEyOklzc3VlQ29tbWVudDM1Mjg4NDcyMA== | duncanwp 3169620 | 2017-12-19T20:59:54Z | 2017-12-19T20:59:54Z | CONTRIBUTOR | Ah yes, sorry about that - fixed now. |
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xarray to and from Iris 278286073 | |
352792765 | https://github.com/pydata/xarray/pull/1750#issuecomment-352792765 | https://api.github.com/repos/pydata/xarray/issues/1750 | MDEyOklzc3VlQ29tbWVudDM1Mjc5Mjc2NQ== | duncanwp 3169620 | 2017-12-19T15:30:22Z | 2017-12-19T15:30:22Z | CONTRIBUTOR | Yep, it's not a very exciting cube, but it runs fine. |
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xarray to and from Iris 278286073 | |
352517727 | https://github.com/pydata/xarray/pull/1750#issuecomment-352517727 | https://api.github.com/repos/pydata/xarray/issues/1750 | MDEyOklzc3VlQ29tbWVudDM1MjUxNzcyNw== | duncanwp 3169620 | 2017-12-18T18:32:50Z | 2017-12-18T18:32:50Z | CONTRIBUTOR | How's this? (I turned the example around so that I create the cube as a DataArray then convert it...) |
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xarray to and from Iris 278286073 | |
352482551 | https://github.com/pydata/xarray/pull/1750#issuecomment-352482551 | https://api.github.com/repos/pydata/xarray/issues/1750 | MDEyOklzc3VlQ29tbWVudDM1MjQ4MjU1MQ== | duncanwp 3169620 | 2017-12-18T16:40:59Z | 2017-12-18T16:40:59Z | CONTRIBUTOR | dask/dask#2977 would certianly make it cleaner, but 95b0197 should work in the meantime, unless there's a specific case I've missed? |
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xarray to and from Iris 278286073 | |
352450958 | https://github.com/pydata/xarray/pull/1750#issuecomment-352450958 | https://api.github.com/repos/pydata/xarray/issues/1750 | MDEyOklzc3VlQ29tbWVudDM1MjQ1MDk1OA== | duncanwp 3169620 | 2017-12-18T15:04:53Z | 2017-12-18T15:04:53Z | CONTRIBUTOR | Great - thanks! |
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xarray to and from Iris 278286073 | |
352398860 | https://github.com/pydata/xarray/pull/1750#issuecomment-352398860 | https://api.github.com/repos/pydata/xarray/issues/1750 | MDEyOklzc3VlQ29tbWVudDM1MjM5ODg2MA== | duncanwp 3169620 | 2017-12-18T11:22:24Z | 2017-12-18T11:22:24Z | CONTRIBUTOR | OK, here's another go. It's not pretty, but it seems to work. Once the various issues referenced above are solved it should clean it up, but I'd rather not wait for those since this has been in the works a while now. |
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xarray to and from Iris 278286073 | |
349602563 | https://github.com/pydata/xarray/pull/1750#issuecomment-349602563 | https://api.github.com/repos/pydata/xarray/issues/1750 | MDEyOklzc3VlQ29tbWVudDM0OTYwMjU2Mw== | duncanwp 3169620 | 2017-12-06T10:46:07Z | 2017-12-06T10:46:07Z | CONTRIBUTOR | Thanks for the feedback @shoyer and sorry for all the typos! |
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xarray to and from Iris 278286073 | |
348434198 | https://github.com/pydata/xarray/pull/1750#issuecomment-348434198 | https://api.github.com/repos/pydata/xarray/issues/1750 | MDEyOklzc3VlQ29tbWVudDM0ODQzNDE5OA== | duncanwp 3169620 | 2017-12-01T08:33:50Z | 2017-12-01T08:34:00Z | CONTRIBUTOR |
It seams like a decent starting point, were there specific decodings you had in mind?
Agreed. Do you have a feel for if/where else this should be documented? I'm not sure if really fits in I/O... |
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xarray to and from Iris 278286073 | |
348221278 | https://github.com/pydata/xarray/pull/814#issuecomment-348221278 | https://api.github.com/repos/pydata/xarray/issues/814 | MDEyOklzc3VlQ29tbWVudDM0ODIyMTI3OA== | duncanwp 3169620 | 2017-11-30T15:25:44Z | 2017-11-30T15:25:44Z | CONTRIBUTOR | I'm happy to pick this up - I'm not sure how best to pick up someone else's pull request though. Am I best off forking nparley:master then resubmitting, or creating a new one and merging in the changes from nparley:master? |
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xarray to and from iris 145140657 | |
343967296 | https://github.com/pydata/xarray/issues/1715#issuecomment-343967296 | https://api.github.com/repos/pydata/xarray/issues/1715 | MDEyOklzc3VlQ29tbWVudDM0Mzk2NzI5Ng== | duncanwp 3169620 | 2017-11-13T16:07:01Z | 2017-11-13T16:07:01Z | CONTRIBUTOR | Yes, you're right - it works now in 0.10.0rc1. Apologies for the noise! |
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Error accessing isnull() and notnull() on Dataset 273459295 | |
291953242 | https://github.com/pydata/xarray/issues/486#issuecomment-291953242 | https://api.github.com/repos/pydata/xarray/issues/486 | MDEyOklzc3VlQ29tbWVudDI5MTk1MzI0Mg== | duncanwp 3169620 | 2017-04-05T18:29:33Z | 2017-04-05T18:29:53Z | CONTRIBUTOR | @jhamman @godfrey4000 - I'm not sure of the status of this, but I'm the lead developer on a package called CIS which might be useful/relevant. It was designed as a command line tool to allow easy collocation (resampling) between different model and observation datasets, but is now also a Python library. We spent a fair amount of time thinking about the various permutations and you can see some of the details in our paper here. Internally we currently use Iris Cube-like objects but it would be pretty easy to operate on xarray Datasets since they share a similar design. The basic syntax is: ``` from CIS import read_data X = read_data('some_obs_data.nc') Y = read_data('some_other_data.nc') X.sampled_from(Y) or...Y.collocated_onto(X)
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API for multi-dimensional resampling/regridding 96211612 |
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