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  • Opening remote file with OpenDAP protocol returns "_FillValue type mismatch" error · 5 ✖

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  • CONTRIBUTOR · 5 ✖
id html_url issue_url node_id user created_at updated_at ▲ author_association body reactions performed_via_github_app issue
954053236 https://github.com/pydata/xarray/issues/5882#issuecomment-954053236 https://api.github.com/repos/pydata/xarray/issues/5882 IC_kwDOAMm_X8443bJ0 raybellwaves 17162724 2021-10-28T17:29:51Z 2021-10-28T17:29:51Z CONTRIBUTOR

Thanks for trying out! I have installed xarray with conda in a newly conda environment (both python 3.6 and 3.8), but I still receive the error:

@raybellwaves which python version are you using?

Output of xr.open_dataset("http://opendap.tudelft.nl/thredds/dodsC/IDRA/2019/10/01/IDRA_2019-10-01_11-00_raw_data.nc")

I'm on 3.9 sorry I can do a full list of my env as I pull from an internal source but the core ones around netcdf I see

netcdf-fortran 4.5.3
netcdf4 1.5.7 libnetcdf 4.8.1

Works in the pangeo docker (https://github.com/pangeo-data/pangeo-docker-images/blob/master/pangeo-notebook/environment.yml) if that helps

docker run -it pangeo/pangeo-notebook /bin/bash python import xarray as xr xr.open_dataset("http://opendap.tudelft.nl/thredds/dodsC/IDRA/2019/10/01/IDRA_2019-10-01_11-00_raw_data.nc")

 
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   Opening remote file with OpenDAP protocol returns "_FillValue type mismatch" error 1032694511
954028015 https://github.com/pydata/xarray/issues/5882#issuecomment-954028015 https://api.github.com/repos/pydata/xarray/issues/5882 IC_kwDOAMm_X8443U_v dopplershift 221526 2021-10-28T16:55:26Z 2021-10-28T16:55:26Z CONTRIBUTOR

Can you post the full traceback you get?

 
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   Opening remote file with OpenDAP protocol returns "_FillValue type mismatch" error 1032694511
953921596 https://github.com/pydata/xarray/issues/5882#issuecomment-953921596 https://api.github.com/repos/pydata/xarray/issues/5882 IC_kwDOAMm_X84427A8 dopplershift 221526 2021-10-28T14:49:26Z 2021-10-28T14:49:26Z CONTRIBUTOR

@saveriogzz I'm confused why you posted results for 3.6 and 3.8, given that the original issue looks like it was posted for 3.7. 🤨 At any rate, looks like your original issue, the output from show_versions() lists libnetcdf=4.7.4. That version should be fixed with regards to the _FillValue type mismatch error.

Your Python 3.8 environment does have an old version of libnetcdf. Can you try doing conda install -n py38 -c conda-forge "libnetcdf>=4.7.4" and see if that fixes your problem?

 
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   Opening remote file with OpenDAP protocol returns "_FillValue type mismatch" error 1032694511
952246143 https://github.com/pydata/xarray/issues/5882#issuecomment-952246143 https://api.github.com/repos/pydata/xarray/issues/5882 IC_kwDOAMm_X844wh9_ dopplershift 221526 2021-10-26T19:29:52Z 2021-10-26T19:29:52Z CONTRIBUTOR

@saveriogzz what is the output of conda list libnetcdf?

 
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   Opening remote file with OpenDAP protocol returns "_FillValue type mismatch" error 1032694511
949880645 https://github.com/pydata/xarray/issues/5882#issuecomment-949880645 https://api.github.com/repos/pydata/xarray/issues/5882 IC_kwDOAMm_X844ngdF raybellwaves 17162724 2021-10-22T18:45:02Z 2021-10-22T18:45:02Z CONTRIBUTOR 
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   Opening remote file with OpenDAP protocol returns "_FillValue type mismatch" error 1032694511

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