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5c97641dd129a9dcc4346a137bcf32a5a982d37a ENH: enable `H5NetCDFStore` to work with already open h5netcdf.File a… (#3618) * ENH: enable `H5NetCDFStore` to work with already open h5netcdf.File and h5netcdf.Group objects, add test * FIX: add `.open` method for file-like objects * FIX: reformat using black * WIP: add item to whats-new.rst * FIX: temporary fix to tackle issue #3680 * FIX: do not use private API, use find_root_and_group instead * FIX: reformat using black 2020-01-20T05:46:13Z 2020-01-20T05:46:13Z Kai Mühlbauer b1298f176a5cd512085eefae3e16f385bfba2d2a Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 kmuehlbauer 5821660 shoyer 1217238
ff6051de5fa61f1e371dea1eaba8edd09288b8d1 Add drop to api.rst under pending deprecations (#3561) * Add drop to api.rst under pending deprecations * typo 2019-11-24T19:31:22Z 2019-11-24T19:31:22Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
220adbc65e0b8c46feddaa6984df4a3a1ce0af6b sparse option to reindex and unstack (#3542) * Added fill_value for unstack * remove sparse option and fix unintended changes * a bug fix * Added sparse option to unstack and reindex * black * More tests * black * Remove sparse option from reindex * try __array_function__ where * flake8 2019-11-19T16:23:33Z 2019-11-19T16:23:33Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
810345c4564a2bc15bf1b4c7ba4c4840238f1e82 FUNDING.yml (#3523) add NumFOCUS github sponsors button (recurring donations only) This feature launched today at GitHub Universe! Also add the custom link to point to the donation form for xarray. cc @shoyer 2019-11-13T20:18:14Z 2019-11-13T20:18:14Z Gina 8fcbbd6168ec6cd02ab976b994341b8bb1660386 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 Dr-G 7980466 shoyer 1217238
b74f80ca2df4920f711f9fe5762458c53ce3c2c6 format indexing.rst code with black (#3511) 2019-11-12T04:31:38Z 2019-11-12T04:31:38Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
bb0a5a2b1c71f7c2622543406ccc82ddbb290ece Escaping dtypes (#3444) * Escaping dtypes * Reformatting 2019-10-24T21:50:19Z 2019-10-24T21:50:19Z Julia Signell c68162e72020e3cef0a61930254687f7ffced922 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 jsignell 4806877 shoyer 1217238
c8dac5866d2c54ee6b262b5060a701e0be1e40cb MAGA (Make Azure Green Again) (#3436) * Support for patch version in min_deps_check.py * Fix requirements * Fix requirements * cftime is 1.0.4 incompatible * Use cftime PR#127 * trivial * trivial 2019-10-23T01:06:09Z 2019-10-23T01:06:09Z crusaderky 2ff6d9e74ee03928d143f0bb1557924a28d3b23d Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 crusaderky 6213168 shoyer 1217238
6ece6a1cf424c3080e216fad8fc8058d3b70aadc Fix DataArray.to_netcdf type annotation (#3325) It calls DataSet.to_netcdf, which returns Union[bytes, "Delayed", None]. So this should as well. 2019-09-27T05:45:26Z 2019-09-27T05:45:26Z Tony Tung cf6475991c703b0f7d4b4dc56d6526a6587cea20 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727   shoyer 1217238
b65ce8666020ba3a0300154655d2e5c05884d73b Honor `keep_attrs` in DataArray.quantile (#3305) * Added `keep_attrs` argument to Variable.quantile. TestDataArray.test_quantile now checks for attributes in output. * black * updated whats new. * removed vestigial comment. Switched default Variable.quantile keep_attrs to False. 2019-09-15T22:16:15Z 2019-09-15T22:16:15Z David Huard 5af532972f5310a40c7ae1e15951da62a431d6b6 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 huard 81219 shoyer 1217238
7fb3b19d47e81afc5f7ff8506f1daeb3906b0fae Accept int value in head, thin and tail (#3298) * Accept int value in head, thin and tail * Fix typing * Remove thin def val and add suggestions * Fix typing and change raise message 2019-09-14T21:46:15Z 2019-09-14T21:46:15Z Gerardo Rivera 07354799b3d1efde7621fcd783157c7e32436919 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 griverat 23618263 shoyer 1217238
e90e8bc06cf8e7c97c7dc4c0e8ff1bf87c49faf6 ignore h5py 2.10.0 warnings and fix invalid_netcdf warning test. (#3301) * ignore h5py 2.10.0 warnings and fix invalid_netcdf warning test. * Better fix. * fix fix. * remove comment. * Add docs. * Revert "Add docs." This reverts commit 14ae0b1153f56144c7a90966512f0a156355cf25. 2019-09-13T15:39:40Z 2019-09-13T15:39:40Z Deepak Cherian 0c7e9e762dbfd6554e60c953bf27493047d95109 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 dcherian 2448579 shoyer 1217238
d1260443d065c3f2ec3f8eb3d999c59a695b35a2 Remove some deprecations (#3292) * remove some deprecations * whatsnew 2019-09-08T22:58:15Z 2019-09-08T22:58:15Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
41fecd8658ba50ddda0a52e04c21cec5e53415ac __slots__ (#3250) * Add __slots__ to most classes * Enforced __slots__for all classes; remove _initialized * Speed up __setattr__ * Fix accessors * DeprecationWarning -> FutureWarning * IndexingSupport enum * What's New * Unit tests * Trivial docstrings and comments tweak * Don't expose accessors in Dataset._replace() 2019-08-29T17:14:19Z 2019-08-29T17:14:19Z crusaderky 2ff6d9e74ee03928d143f0bb1557924a28d3b23d Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 crusaderky 6213168 shoyer 1217238
f8647183c49c806896a2c94d12c5df56cb7f389e Raise proper error for scalar array when coords is a dict (#3271) * Dims and shape check when coords is a dict * Update test to the correct raise message * Move logic and change raise message 2019-08-29T17:08:59Z 2019-08-29T17:08:59Z Gerardo Rivera 07354799b3d1efde7621fcd783157c7e32436919 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 griverat 23618263 shoyer 1217238
aaeea6250b89e3605ee1d1a160ad50d6ed657c7e BUG: Fixes GH3215 (#3220) * BUG: Fixes GH3215 Explicit cast to numpy array to avoid np.ravel calling out to dask * Added test * Added assertion to test * Removed assertion. Didn't work * PEP8 and flake fixes * Ran black * Implement suggested fixes * Added assert test * Added valid assert_identical test * add requires_dask 2019-08-28T06:45:34Z 2019-08-28T06:45:34Z Aidan Heerdegen fa671342c743d7974f3cfd9c640579e23103973a Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 aidanheerdegen 6063709 shoyer 1217238
8969b5a974723dc13ce93db1e878f791764f539e Issue 3227: Remove unwanted files created by ipython examples. (#3270) 2019-08-28T00:02:01Z 2019-08-28T00:02:01Z Gregory Gundersen 95d2b9ab3b4f0f284edef1a1cadc6ac2272212e4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 gwgundersen 2818208 shoyer 1217238
e3b3bed2c2e27eb74adc2b7f80c365c2928cd78b Raise on inplace=True (#3260) * raise on inplace=True * remove from docstrings * missed (at least) one * remove from internal methods in dataarray * TypeError * typeerror dataarray * whatsnew * inplace returns no value 2019-08-26T18:43:51Z 2019-08-26T18:43:51Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
2fdcbb6feccb01a97b8b51160b81e238486fff00 Add note about accessor instance creation (#3209) 2019-08-14T05:33:48Z 2019-08-14T05:33:48Z David Hoese 48ac9bccdbfd665c0202c9eb65890f4d8ca1c64a Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 djhoese 1828519 shoyer 1217238
097306bae06118d837c1cb57ac8cc11cbf87a972 BUG fix +test .sel method gives error with float32 values (#3153) * BUG fix +test .sel method gives error with float32 values .sel method gives error when it is used to select float32 values Resolves: #3137 * BUG .sel method gives error with float32 values avoid copying indexers for efficiency * BUG: .sel method fails when label is float differnt from coords float type casting at a lower level closer to pandas.Index methods * BUG: .sel method fails when label is float differnt from coords float type casting at a lower level closer to pandas.Index methods * Update xarray/core/indexing.py Co-Authored-By: Stephan Hoyer <shoyer@gmail.com> * BUG: .sel method gives error when label is float different from coords float type generalizing to coerce numpy arrays in addtion to lists/floats * Black 2019-08-10T22:24:26Z 2019-08-10T22:24:26Z Hasan Ahmad 9a0744c04e79529cb518717b0608f1b4b3bcc013 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 HasanAhmadQ7 32473508 shoyer 1217238
bbd25c65a874dfd505ab9df43f6109f6343e5f4d Support for __array_function__ implementers (sparse arrays) [WIP] (#3117) * Support for __array_function__ implementers * Pep8 * Consistent naming * Check for NEP18 enabled and nep18 non-numpy arrays * Replace .values with .data * Add initial test for nep18 * Fix linting issues * Add parameterized tests * Internal clean-up of isnull() to avoid relying on pandas This version should be much more compatible out of the box with duck typing. * Add sparse to ci requirements * Moar tests * Two more patches for __array_function__ duck-arrays * Don't use coords attribute from duck-arrays that aren't derived from DataWithCoords * Improve checking for coords, and autopep8 * Skip tests if NEP-18 envvar is not set * flake8 * Update xarray/core/dataarray.py Co-Authored-By: Stephan Hoyer <shoyer@gmail.com> * Fix coords parsing * More tests * Add align tests * Replace nep18 tests with more extensive tests on pydata/sparse * Add xfails for missing np.result_type (fixed by pydata/sparse/pull/261) * Fix xpasses * Revert isnull/notnull * Fix as_like_arrays by coercing dense arrays to COO if any sparse * Make Variable.load a no-op for non-dask duck arrays * Add additional method tests * Fix utils.as_scalar to handle duck arrays with ndim>0 2019-08-05T18:44:43Z 2019-08-05T18:44:43Z Nezar Abdennur 84e620c8a0c57a3b676a20d0134cbc5f75cefe5b Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 nvictus 1270651 shoyer 1217238
86799b78ae271d9f68a2ad5eb6aa15916f0b19ab changed url for rasterio network test (#3162) * changed url for rasterio network test * added boto3 to ci requirements.ymls 2019-07-31T00:28:45Z 2019-07-31T00:28:45Z Scott Henderson afc51a0a930e9022c8c17f9692c71a87fd110afd Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 scottyhq 3924836 shoyer 1217238
dfa97dadfd8551b4f06b8c5601fa47b6dea2c1a0 to_zarr(append_dim='dim0') doesn't need mode='a' (#3123) * to_zarr(append_dim='dim0') doesn't need mode='a' * Updated whats-new.rst * Default mode=None allows checking consistency with append_dim * Fix PEP8 issue * Moved mode handling from api.py to dataset.py * Fix closing bracket indentation 2019-07-29T15:54:44Z 2019-07-29T15:54:44Z David Brochart 5416ffd189976d1fa74f3053c7f1455efaf9f7de Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 davidbrochart 4711805 shoyer 1217238
9afe4d0cc1c5bee68a3e28887125a31336e4f58f Fix h5py version printing (#3145) * h5py version print * zero f-strings given 2019-07-19T07:32:27Z 2019-07-19T07:32:27Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
c46fae1a2ea5572316007d7e4fe84da4b7ec9f32 disable codecov comments (#3140) 2019-07-18T01:12:37Z 2019-07-18T01:12:37Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
8da3f67ea583e0588291162067229b2f3ce2993e Merge broadcast_like docstrings, analyze implementation problem (#3130) * Merge broadcast_like docstrings, analyze implementation problem * PEP8 fixes * PEP8 fixes * Fix dataarray bug * Fix broadcast_like logic error * Remove unused import * Add back additional broadcast_like tests * lint 2019-07-16T17:43:36Z 2019-07-16T17:43:36Z David Mertz d44c94db7f6703b8db1954f777781b8327dca203 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 DavidMertz 2380665 shoyer 1217238
3c05a203e4de5c1345cd10fdc336a9f729b1a633 Fix tests on big-endian systems (#3125) * Fix tests on big-endian systems * PEP 8 2019-07-15T18:57:54Z 2019-07-15T18:57:54Z Graham Inggs 70d223991b3dacf4bc00c02924800a3d2eaf5d8f Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 ginggs 1970404 shoyer 1217238
3ceb0380eeda2ed132af44b16bbb8ab4b2c678c9 XFAIL tests failing on ARM (#2334) * XFAIL tests failing on ARM These tests are expected to fail on ARM due to the following issue in NumPy: https://github.com/numpy/numpy/issues/8325 * PEP 8 2019-07-15T18:57:30Z 2019-07-15T18:57:30Z Graham Inggs 70d223991b3dacf4bc00c02924800a3d2eaf5d8f Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 ginggs 1970404 shoyer 1217238
9438390da9ecafc2601a7f06c9e4f87637b456df Add broadcast_like. (#3086) * Add broadcast_like. Closes #2885 * lint. * lint2 * Use a helper function * lint 2019-07-14T20:24:32Z 2019-07-14T20:24:32Z Deepak Cherian 0c7e9e762dbfd6554e60c953bf27493047d95109 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 dcherian 2448579 shoyer 1217238
c4497ff3121f75ec0f7c6a1b9a51fde336c19fcd Better docs and errors about expand_dims() view (#3114) * Better docs and errors about expand_dims() view * Add test and whatsnew note * Remove trailing whitespace * Whitespace for PEP8 * Py35 compatible test * Better docs and errors about expand_dims() view * Add test and whatsnew note * Remove trailing whitespace * Whitespace for PEP8 * Py35 compatible test * Improved exception testing 2019-07-14T18:57:38Z 2019-07-14T18:57:38Z David Mertz d44c94db7f6703b8db1954f777781b8327dca203 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 DavidMertz 2380665 shoyer 1217238
82fd8320b1be7a434effd247baf07004b66b802f add to netCDF groups description (#3113) 2019-07-14T05:34:55Z 2019-07-14T05:34:55Z Zach Griffith 79c4e78b24bd44d6665e4c80cc9163e5cfe87f1a Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 zdgriffith 17169544 shoyer 1217238
960a27e38f95b8f35b11f0ae4693258f9bf0959d Remove old issue template, small changes to current template (#3097) * remove old template and marginally update current template * spacing 2019-07-14T05:32:40Z 2019-07-14T05:32:40Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
b3ba4ba5f9508e4b601d9cf5dbcd9024993adf37 change name of test env to xarray-tests (#3110) 2019-07-13T17:11:51Z 2019-07-13T17:11:51Z Zach Griffith 79c4e78b24bd44d6665e4c80cc9163e5cfe87f1a Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 zdgriffith 17169544 shoyer 1217238
6586c26af6e55279efe646188b39ee1caf86db23 Fix minor typos in documentation (#3104) 2019-07-12T16:51:54Z 2019-07-12T16:51:54Z lumbric 59ea58fa1613b83ce51d483a000503cfce833810 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 lumbric 691772 shoyer 1217238
ed421e80e69788b92cdda050b0ac389ecce590fb Improve open_mfdataset deprecation warnings (#3101) * Updated deprecation warnings to be more specific and link to docs * Corresponding tests checking for new warning * Removed trailing whitespace 2019-07-12T15:43:31Z 2019-07-12T15:43:31Z Tom Nicholas 26a6f89d5f52aa3fe5267933be6139d10dfff2a7 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 TomNicholas 35968931 shoyer 1217238
8f0d9e5c9909c93a90306ed7cb5a80c1c2e1c97d WIP: more annotations (#3090) * Typing hints for Dataset.to_netcdf * type annotations * poke codecov 2019-07-11T04:20:55Z 2019-07-11T04:20:55Z crusaderky 2ff6d9e74ee03928d143f0bb1557924a28d3b23d Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 crusaderky 6213168 shoyer 1217238
ae6907928499436b7ea133ca5f000249890ec80a whats-new for 0.12.4 2019-07-10T19:58:18Z 2019-07-10T19:58:18Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
38ee23f96035df95ee3baf06645ef5a21616f47f move around whats-new 2019-07-10T19:57:15Z 2019-07-10T19:57:15Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
96a337f451885d22a9cb4dca55d04a045ba4e4ff Finalize whats-new for 0.12.3 2019-07-10T17:59:47Z 2019-07-10T19:53:18Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
1d7a0247e36ce74c33597e4054b64ae37afb61ce Add `scales` attributes to Dataset created in open_rasterio (#3012) (#3013) * Add `scales` attributes to Dataset created in open_rasterio (#3012) * Add `offsets` and `descriptions` attributes (xr.open_rasterio) (#3012) * Add `units` attribute to Dataset returned by xr.open_rasterio (#3012) * Test `descriptions` and `units` attrs (#3012) * pep8 * Expose `mask_flags` attributes of rasterio dataset * pep8 * Update doc/whats-new.rst * Expose mask_flags as int bit mask * pep8 * delete xarray/tests/data/example.grib.011ab.idx * Remove mask_flags attribute * Update whats-new.rst * Fix merge 2019-07-10T16:00:49Z 2019-07-10T16:00:49Z Erle Carrara 61b75dad5acf30d5a4d357565dc2b68ad3778a87 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 ecarrara 191850 shoyer 1217238
681893ed96685052e5f5822cc867245aaf138b32 More annotations (#3088) * More type annotations in Dataset (incomplete) * mypy fixes * Signature of Dataset.update * flake8 2019-07-09T16:23:11Z 2019-07-09T16:23:11Z crusaderky 2ff6d9e74ee03928d143f0bb1557924a28d3b23d Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 crusaderky 6213168 shoyer 1217238
9c0fb6c6ca4a4da52ba5b0c2b17c12573a66def0 Add methods for combining variables of differing dimensionality (#1597) * Add stack_cat and unstack_cat methods This partially resolves #1317. Change names of methods stack_cat -> to_stacked_array unstack_cat -> to_unstacked_dataset Test that the dtype of the stacked dimensions is preserved This is not passing at the moment because concatenating None with a dimension that has values upcasts the combined dtype to object Fix dtypes of stacked dimensions This commit ensures that the dtypes of the stacked coordinate match the input dimensions. Use new index variable rather than patching the old one I didn't like the inplace modification of a private member. Handle variable_dim correctly I also fixed 1. f-string formatting issue 2. Use an OrderedDict as @jhamman recommends Add documentation to api.rst and reshaping.rst I also added appropriate See Also sections to the docstrings for to_stacked_array and to_unstacked_dataset. Add changes to whats-new Fixing style errors. Split up lengthy test Remove "physical variable" from docs This is in response to Joe's "nit" * Fix to_stacked_array with new master An error arose when checking for the precence of a dimension in array. The code 'dim in data' no longer works. Replaced this with 'dim in data.dims' * Move entry in whats-new to most recent release * Fix code styling errors It needs to pass `pycodestyle xarray` * Improve docstring of to_stacked_array Added example and additional description. * Move "See Also" section to end of docstring * Doc and comment improvements. * Improve documented example @benbovy pointed out that the old example was confusing. * Add name argument to to_stacked_array and test * Allow level argument to be an int or str * Remove variable_dim argument of to_unstacked_array * Actually removed variable_dim * Change function signature of to_stacked_array Previously, this function was passed a list of dimensions which should be stacked toge… 2019-07-05T00:32:50Z 2019-07-05T00:32:50Z Noah D Brenowitz cac54aaf99307ae2c1b0a9d378f9016e48d1796c Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 nbren12 1386642 shoyer 1217238
681ec0e84af7c155b16ef46122e2a6cea64b585d Fix error message (#3076) 2019-07-02T21:27:40Z 2019-07-02T21:27:40Z David Brochart 5416ffd189976d1fa74f3053c7f1455efaf9f7de Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 davidbrochart 4711805 shoyer 1217238
af37ddd0e09024cb23438a9403ec0670e2dae5e4 Add rename_vars and rename_dims (#3045) * Added rename_coords and rename_dims * Removed white space from blank lines * Changed rename_coords to rename_vars * Changed rename_coords to rename_vars in "See Also" or rename fx * Fixed renaming dimension indexing * Added testing for rename_vars and rename_dims * Testing and fx for renaming vars and dims * Met pep8 standards * Undid autopep8 for lines w noqa * Update xarray/tests/test_dataset.py Co-Authored-By: Maximilian Roos <5635139+max-sixty@users.noreply.github.com> * Cleaned up helper fxs and added actual_2 test * Update xarray/core/dataset.py Co-Authored-By: Maximilian Roos <5635139+max-sixty@users.noreply.github.com> * Update xarray/core/dataset.py Co-Authored-By: Maximilian Roos <5635139+max-sixty@users.noreply.github.com> * deleted misc file * Update xarray/core/dataset.py Co-Authored-By: Maximilian Roos <5635139+max-sixty@users.noreply.github.com> * _rename_var_dims_helper undefined test * Use separate rename_dims and rename_vars dictionaries * Fixed documentation and added inplace back * removing changes from rename * removed test set up to fail (will add back) * fixed coord vs variable in test rename_ * Moved rename_var to under new fx/methods * Update whats-new.rst * use pytest.raises to test for ValueError * did not assign failed * pep8 compliance 2019-07-02T20:24:54Z 2019-07-02T20:24:54Z Julia Kent 0b1648bb11ab8462ffca6a7ac841624789ad9c0f Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 jukent 46687291 shoyer 1217238
8c61997d0daa5564a007458ab4febebcecdc30af Removed rogue print statement in N-D combine (#3074) 2019-07-02T14:16:42Z 2019-07-02T14:16:42Z Tom Nicholas 26a6f89d5f52aa3fe5267933be6139d10dfff2a7 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 TomNicholas 35968931 shoyer 1217238
406c16263f9854bda88f92308611b1a586551761 kwargs.pop() cleanup (#3065) * Python 3 classes don't need to subclass object * kwds -> kwargs * kwargs.pop() * SplineInterpolator would write to class attribute Iterable doesn't have a len or positional access kwargs.pop() cleanup * kwargs.pop(); clean up tampering with a kwargs dict * kwargs.pop() * kwargs.pop() * trivial * kwargs.pop() * pep8 * pep8 * Fix regression * Remove useless code * Revert "Remove useless code" This reverts commit 0b23f3f8 * Clarification 2019-07-01T01:58:49Z 2019-07-01T01:58:49Z crusaderky 2ff6d9e74ee03928d143f0bb1557924a28d3b23d Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 crusaderky 6213168 shoyer 1217238
1cd7132d7799846f5b5e477ecd73f46df64a3c39 Add new section to whats-new for 0.12.3 2019-06-30T03:41:30Z 2019-06-30T03:41:30Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
fbe53fe2a35b3eeda63e50f1f38c7cfc92134a0c Fix setup.py description for 0.12.2 2019-06-30T03:38:35Z 2019-06-30T03:38:35Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
18f35da6ac14b078772357b6bc11d3af5296afba Appending to zarr store (#2706) * Initial version of appending to zarr store * Added docs * Resolve PEP8 incompliances * Added write and append test for mode 'a' * Merged repaired master * Resolved pep8 issue * Put target store encoding in appended variable * Rewrite test with appending along time dimension * Add chunk_size parameter for rechunking appended coordinate * Add chunk_dim test * Add type check and tests for it. In append mode storing any datatype apart from number subtypes and fixed size strings raises and error. * Add documentation * Add test for compute=False and commented it out * Remove python 3.7 string formatting * Fix PEP8 incompliance * Add missing whitespaces * allowed for compute=False when appending to a zarr store * Fixed empty array data error When using create_append_test_data we used np.arange(...), which was incidently also the default value of the zarr array when fill_value is set to None. So appending to the data with compute=False and then expecting an error when asserting the source and target to be the same failed the tests. Using random data passes the tests * flake8 fixes * removed chunk_dim argument to to_zarr function * implemented requested changes * Update xarray/backends/api.py Co-Authored-By: Stephan Hoyer <shoyer@gmail.com> * added contributors and example of using append to zarr * fixed docs fail * fixed docs * removed unnecessary condition * attempt at clean string encoding and variable length strings * implemented suggestions * * append_dim does not need to be specified if creating a new array with Dataset.to_zarr(store, mode='a') * cleand up to_zarr append mode tests * raise ValueError when append_dim is not a valid dimension * flake8 fix * removed unused comment * * raise error when appending with encoding provided for existing variable * add test for encoding consistency when appending * implemented: https://github.com/pydata/xarray/pull/2706#discussion_r… 2019-06-29T23:43:14Z 2019-06-29T23:43:14Z Jendrik Jördening 1fb9e7ae004febb59559d36136b2695db0a5fcd2 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 jendrikjoe 9658781 shoyer 1217238
a52110cde96cdf78b59282d577ece23682975b2e pytest deprecation (#3051) 2019-06-27T20:25:01Z 2019-06-27T20:25:01Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
17d18ce8230fea74e72ad59b84386cf662448d45 Rename combine functions (#3043) * Renamed combine functions in code * Renamed combine functions in docs * pep8 fixes * Fixed mistake in docstring * Removed trailing whitespace in error messages 2019-06-26T15:00:38Z 2019-06-26T15:00:38Z Tom Nicholas 26a6f89d5f52aa3fe5267933be6139d10dfff2a7 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 TomNicholas 35968931 shoyer 1217238
8c73852541a8a96232e98af9f24365551cf3ad40 Upgrade mypy & DataWithCoords check (#3044) 2019-06-26T04:04:39Z 2019-06-26T04:04:39Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
d3f6db9d1eee54b51d2b0cd9a0a01a411d2148b7 WIP: typing for DataArray/Dataset (#2929) * typing for DataArray/Dataset (incomplete) * Finished dataarray.py * Bugfixes * Bugfixes * trivial * Dataset (partial) * Bugfixes * Minor tweaks * final changes to dataset & dataarray for mypy * mypy str conflict * remove temp ptw setting * OrderedDict-related fixes * fix tests re dict * fix mypy re dict * merge issue re encoding kwarg * weird python35 syntax error * Hashable -> Any for Dicts * DataArray names as Hashable * resolve some __default vs None issues * whats-new * just specify Tuple at the moment * remove unneeded cast, make arg formatting more black-like * adjust init args based on @shoyer review * add Tuple[Tuple] to dataset init types * tuples not all the way down 2019-06-25T22:03:39Z 2019-06-25T22:03:39Z crusaderky 2ff6d9e74ee03928d143f0bb1557924a28d3b23d Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 crusaderky 6213168 shoyer 1217238
6b33ad8b3e56834c3a345f21afc17680a164c5e9 API for N-dimensional combine (#2616) * concatenates along a single dimension * Wrote function to find correct tile_IDs from nested list of datasets * Wrote function to check that combined_tile_ids structure is valid * Added test of 2d-concatenation * Tests now check that dataset ordering is correct * Test concatentation along a new dimension * Started generalising auto_combine to N-D by integrating the N-D concatentation algorithm * All unit tests now passing * Fixed a failing test which I didn't notice because I don't have pseudoNetCDF * Began updating open_mfdataset to handle N-D input * Refactored to remove duplicate logic in open_mfdataset & auto_combine * Implemented Shoyers suggestion in #2553 to rewrite the recursive nested list traverser as an iterator * --amend * Now raises ValueError if input not ordered correctly before concatenation * Added some more prototype tests defining desired behaviour more clearly * Now raises informative errors on invalid forms of input * Refactoring to alos merge along each dimension * Refactored to literally just apply the old auto_combine along each dimension * Added unit tests for open_mfdatset * Removed TODOs * Removed format strings * test_get_new_tile_ids now doesn't assume dicts are ordered * Fixed failing tests on python3.5 caused by accidentally assuming dict was ordered * Test for getting new tile id * Fixed itertoolz import so that it's compatible with older versions * Increased test coverage * Added toolz as an explicit dependency to pass tests on python2.7 * Updated 'what's new' * No longer attempts to shortcut all concatenation at once if concat_dims=None * Rewrote using itertools.groupby instead of toolz.itertoolz.groupby to remove hidden dependency on toolz * Fixed erroneous removal of utils import * Updated docstrings to include an example of multidimensional concatenation * Clarified auto_combine docstring for N-D behaviour * Added unit test for nested list … 2019-06-25T15:14:34Z 2019-06-25T15:14:34Z Tom Nicholas 26a6f89d5f52aa3fe5267933be6139d10dfff2a7 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 TomNicholas 35968931 shoyer 1217238
b054c317f86639cd3b889a96d77ddb3798f8584e Add quantile method to GroupBy (#2828) * implement groupby.quantile + tests * added quantile method in whats-new * mark additional test as xfail. * lint fix * simpler version of groupby.quantile * added quantile methods to api.rst * included DEFAULT_DIMS handling in quantile method * clarified groupby tests * added test with more typical use case * pep8 * removed failing test 2019-06-24T15:21:28Z 2019-06-24T15:21:28Z David Huard 5af532972f5310a40c7ae1e15951da62a431d6b6 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 huard 81219 shoyer 1217238
cfd821065341e386b3e4a1e6e09bf8d952ed0e2a rolling_exp (nee ewm) (#2650) * WIP on ewm using numbagg * basic functionality, no dims working yet * rename to `rolling_exp` * ensure works on either dimensions * window_type working * add numbagg to travis install * naming * formatting * @shoyer's function to abstract the type of self.obj * initial docstring * add docstrings to docs * example * correct location for docs * add numbagg to print_versions * whatsnew * updating my GH username * pin to numbagg release * rename inner func to move_exp_nanmean * merge * typo * comments from PR * window -> alpha in numbagg * add docs * doc fix * whatsnew update * revert formatting changes to unchanged file * update docstrings, adjust kwarg names * mypy * flake * pytest config tiny tweak while I'm here * Rolling exp doc updates * remove _attributes from RollingExp class 2019-06-24T15:20:31Z 2019-06-24T15:20:31Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
56fc325ae029b5aa8fc4556197103a1a2eb31702 add back dask-dev tests (#3025) 2019-06-23T11:47:04Z 2019-06-23T11:47:04Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
ff4198865b42ee2f6f99f3f6f83fed68ef4ffbc7 ENH: keepdims=True for xarray reductions (#3033) * ENH: keepdims=True for xarray reductions Addresses #2170 Add new option `keepdims` to xarray reduce operations, following the behaviour of Numpy. `keepdims` may be passed to reductions on either Datasets or DataArrays, and will result in the reduced dimensions being still present in the output with size 1. Coordinates that depend on the reduced dimensions will be removed from the Dataset/DataArray * Set the default to be `False` * Correct lint error * Apply suggestions from code review Co-Authored-By: Maximilian Roos <5635139+max-sixty@users.noreply.github.com> * Add test for dask and fix implementation * Move 'keepdims' up to where 'dims' is set * Fix lint, add test for scalar variable 2019-06-23T09:18:32Z 2019-06-23T09:18:32Z Scott Wales d1b38379cd5800b7b69a7a1debcff7e12d442de0 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727   shoyer 1217238
724ad8301c9177f0f18476c03f4843006a4de691 Revert cmap fix (#3038) * Test for levels + provided cmap * Revert "plot: If provided with colormap do not modify it. (#2935)" This reverts commit ab3972294860447f9515c7b7b0a04838db061496. * lint 2019-06-22T17:16:35Z 2019-06-22T17:16:35Z Deepak Cherian 0c7e9e762dbfd6554e60c953bf27493047d95109 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 dcherian 2448579 shoyer 1217238
9c0bbf744a5235b4187f87de49175e6776d813cb Add "errors" keyword argument to drop() and drop_dims() (#2994) (#3028) * Add "errors" keyword argument (GH2994) Adds an errors keyword to Dataset.drop(), Dataset.drop_dims(), and DataArray.drop() (GH2994). Consistent with pandas, the value can be either "raise" or "ignore" * Fix quotes * Different pandas versions raise different errors * Error messages also vary * Correct doc for DataArray.drop; array, not dataset * Require errors argument to be passed with a keyword 2019-06-20T15:47:59Z 2019-06-20T15:47:59Z Andrew Ross c14e86459d07dc4f249a4eb19ec8fe406eb42ce9 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 andrew-c-ross 5852283 shoyer 1217238
4c758e6ad282228ec52c277471db7cfb4f1f050f Check types in travis (#3024) * lint mypy typing * dot * revert autoformat * allow failures for typing 2019-06-18T05:12:47Z 2019-06-18T05:12:47Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
c2a2a6efcaf2d279c78da4ba3a87ea96afe78be0 Update issue templates (#3019) 2019-06-15T03:35:16Z 2019-06-15T03:35:16Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
85fc44156722891b333f1b559ed2bb5e33f87fa8 Add pytest markers to avoid warnings (#3023) * add pytest markers to avoid warnings * add a pytest straggling (was on different line so not picked up by regex) * whatsnew * revert autoformat 2019-06-15T00:34:03Z 2019-06-15T00:34:03Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
3429ca2aa2a07cd77797f5a4c036d6a325f2003f Use flake8 rather than pycodestyle (#3010) * A few flake fixes * isort * bunch of flake8 errors fixed * flake8 config * pep8speaks config * run flake8 in travis * docs to flake8 * pep8speaks configs inherited from setup.cfg * too much isort, skipped base __init__ * imports * install flake8 in travis * update 3.6 reqs 2019-06-12T04:56:36Z 2019-06-12T04:56:36Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
fda60563bbca7eea6fabd6603750f359e1ad00ef Pandas labels deprecation (#3016) * Pandas deprecation * allow for older versions of pandas * update docs 2019-06-11T22:58:25Z 2019-06-11T22:58:25Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
43834ac8186a851b7ea5aed8657b72d62fa3695f dask-dev tests to allowed failures in travis (#3014) 2019-06-11T02:45:47Z 2019-06-11T02:45:47Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 max-sixty 5635139 shoyer 1217238
adbd59a0498cce298d88d9383837c968bebae538 Fix 'to_masked_array' computing dask arrays twice (#3006) 2019-06-10T13:25:57Z 2019-06-10T13:25:57Z David Hoese 48ac9bccdbfd665c0202c9eb65890f4d8ca1c64a Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 djhoese 1828519 shoyer 1217238
fa55060802a2c772eecef96b6c4ce672dca9dc81 str accessor (#2991) 2019-06-10T13:11:10Z 2019-06-10T13:11:10Z nullptr c1daf260be4f5ddb2eb15b41e4f0073d13be76df Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 0x0L 3621629 shoyer 1217238
7e649e415e8023b05eb56b3ffadd0d930381f6e0 fix safe_cast_to_index (#3001) 2019-06-10T04:48:44Z 2019-06-10T04:48:44Z nullptr c1daf260be4f5ddb2eb15b41e4f0073d13be76df Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 0x0L 3621629 shoyer 1217238
5b3a41d5761edb2240df5a4475196e4939b33719 Implement @ operator for DataArray (#2987) * implement @ operator for DataArray * flake * whatsnew * add doc example and rmatmul 2019-06-01T19:42:20Z 2019-06-01T19:42:20Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 max-sixty 5635139 shoyer 1217238
74e5ff64171e84a2da3984f512d2134a233240e2 Add strftime() to datetime accessor with cftimeindex and dask support (#2989) * Add strftime to DatetimeAccessor Includes Dask support and cftime values * add strftime to cftimeindex change datetime.accessor to pass thru to cftimeindex.strftime * pep8 formatting cleanup * Improve cftimeindex and dt.strftime docstrings * Minor code cleanups remove extra strftime_through_arrays function * edits to make docstring prettier for pep8 * Add strftime accessor and cftimeindex method to whats new * Apply suggested doc edits as single commit Add cftimeindex.strftime to api-hidden.rst * Include missing backtick in what's new docs Co-Authored-By: Spencer Clark <spencerkclark@gmail.com> * "an Index" not "a Index" * Add examples to User Gude docs Added some short examples to time-series and weather-climate pages * Update doc/whats-new.rst Co-Authored-By: Spencer Clark <spencerkclark@gmail.com> 2019-06-01T07:51:16Z 2019-06-01T07:51:16Z Alan Brammer 43238f2f0c34bcece336dcddfaa5752b1c3d7d94 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 abrammer 6145107 shoyer 1217238
6dc8b60849fab48f24494859c15a42f078025be6 Add fill_value for concat and auto_combine (#2964) * add fill_value option for concat and auto_combine * add tests for fill_value in concat and auto_combine * remove errant whitespace * add fill_value description to doc-string * add missing assert 2019-05-27T00:20:54Z 2019-05-27T00:20:54Z Zach Griffith 79c4e78b24bd44d6665e4c80cc9163e5cfe87f1a Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 zdgriffith 17169544 shoyer 1217238
0811141e8f985a1f3b95ead92c3850cc74e160a5 Add transpose_coords option to DataArray.transpose (#2556) * Add transpose_coords option to DataArray.transpose Fixes #1856 * Fix typo * Fix bug in transpose Fix python 2 compatibility * Set default for transpose_coords to None Update documentation * Fix bug in coordinate tranpose Update documentation * Suppress FutureWarning in tests * Add restore_coord_dims parameter to DataArrayGroupBy.apply * Move restore_coord_dims parameter to GroupBy class * Remove restore_coord_dims parameter from DataArrayResample.apply * Update whats-new * Update whats-new 2019-05-21T17:37:54Z 2019-05-21T17:37:54Z Peter Hausamann c035fd44a91b64ceb9d0d3134f995abca1378198 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 phausamann 4687996 shoyer 1217238
bd78b7f1f46a0fb0a0b0f2d4f4bdbacba55be93d Implement load_dataset() and load_dataarray() (#2917) * Partial fix for #2841 to improve formatting. Updates formatting to use .format() instead of % operator. Changed all instances of % to .format() and added test for using tuple as key, which errored using % operator. * Revert "Partial fix for #2841 to improve formatting." This reverts commit f17f3ad1a4a2069cd70385af8ad331f644ec66ba. * Implement load_dataset() and load_dataarray() BUG: Fixes #2887 by adding @shoyer solution for load_dataset and load_dataarray, wrappers around open_dataset and open_dataarray which open, load, and close the file and return the Dataset/DataArray TST: Add tests for sequentially opening and writing to files using new functions DOC: Add to whats-new.rst. Also a tiny change to the open_dataset docstring Update docstrings and check for cache in kwargs Undeprecate load_dataset Add to api.rst, fix whats-new.rst typo, raise error instead of warning 2019-05-16T15:28:29Z 2019-05-16T15:28:29Z Dan Nowacki 74ebd7bdbe36bac6788cdbc5e5e9b088ddb56dd3 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 dnowacki-usgs 13837821 shoyer 1217238
698293e6cdff8be94464af00e8b8f171e8fd1557 Mark test for copying coords of dataarray and dataset with xfail. It looks like the test fails for the shallow copy, and apparently only on Windows for some reason. In Windows coords seem to be immutable unless it's one dataarray deep copied from another (which is why only the deep=False test fails). (#2953) 2019-05-09T22:17:52Z 2019-05-09T22:17:52Z Martin Pletcher 8ff6fcb2bc6801ae8c028c7f68c721d12fa003e4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 pletchm 10720577 shoyer 1217238
24d49fcd723f20b09998c302dc6003b8de69e595 Base classes in Python 3 don't need to subclass object (#2950) * Base classes in Python 3 don't need to subclass object * What's new 2019-05-09T16:01:36Z 2019-05-09T16:01:36Z crusaderky 2ff6d9e74ee03928d143f0bb1557924a28d3b23d Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 crusaderky 6213168 shoyer 1217238
5aaa6547cd14a713f89dfc7c22643d86fce87916 [WIP] Custom fill value for reindex, align, and merge operations (#2920) * add fill_value option to align and reindex functions * add fill_value tests for reindex and align * add fill_value option for merge functions * add tests for fill_value merge implementation * implement and test fill_value option in dataaarray reindex methods * fix PEP 8 issue * move function signature onto function * Add fill_value enhancement note 2019-05-05T00:20:54Z 2019-05-05T00:20:54Z Zach Griffith 79c4e78b24bd44d6665e4c80cc9163e5cfe87f1a Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 zdgriffith 17169544 shoyer 1217238
dd99b7d7d8576eefcef4507ae9eb36a144b60adf List formatting in docs (#2939) * list formatting in docs * pep8 2019-05-03T20:14:27Z 2019-05-03T20:14:27Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
aebe60c8593447c7ef95ca6af6eaef1f7fedc6d5 Minor improvement of docstring for Dataset (#2904) This might help to avoid confusion. data_vars is always a mapping, not a mapping, a variable or a tuple. 2019-04-17T20:08:45Z 2019-04-17T20:08:45Z lumbric 59ea58fa1613b83ce51d483a000503cfce833810 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 lumbric 691772 shoyer 1217238
64d2720ee70b048d9eae813105ca01431025a143 Bugfix for docs build instructions (#2897) 2019-04-16T03:57:27Z 2019-04-16T03:57:27Z Julius Busecke 6203fc2a24e79e1768d53563148c54d0294086fd Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727   shoyer 1217238
fad6d624f0716657f903f5955f16422d97275407 Return correct count for scalar datetime64 arrays (#2892) BUG: Fix #2770 by changing ~ to np.logical_not() TST: Add test for scalar datetime64 value DOC: Add to whats-new.rst 2019-04-14T00:51:58Z 2019-04-14T00:51:58Z Dan Nowacki 74ebd7bdbe36bac6788cdbc5e5e9b088ddb56dd3 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 dnowacki-usgs 13837821 shoyer 1217238
33540590915c31cd5af583412d155d7fa8ea8081 Indexing with an empty array (#2883) * Indexing with an empty array Closes #2882 * Adds 2882 resolution to whats-new.rst * Create empty indexing array directly * assert xxx -> asset_identical 2019-04-12T00:25:43Z 2019-04-12T00:25:43Z Mayeul d'Avezac 766041a42c5986539ecfe73d7585c3c205ebe85a Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 mdavezac 2745737 shoyer 1217238
3fb22cbf86e49be4a444fa062350bf7570abd6da WIP: type annotations (#2877) * typing for core.common and core.utils * Cleanup of core.common core.utils * Remove ambiguous overload See: https://mypy.readthedocs.io/en/latest/more_types.html#type-checking-the-variants * dims are generic Hashable; support for Python 3.5.0~3.5.2 * fixes * fixes * More polish for common and utils * More polish for common and utils * More polish for common and utils * code review 2019-04-10T18:41:49Z 2019-04-10T18:41:49Z crusaderky 2ff6d9e74ee03928d143f0bb1557924a28d3b23d Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 crusaderky 6213168 shoyer 1217238
2c10d1443bea09e5ef53e5a7e35195a195e193a7 decreased pytest verbosity (#2881) 2019-04-09T23:34:21Z 2019-04-09T23:34:21Z Ryan Abernathey 50f308688403ffa4670d1b45f2b77ab73ff8d786 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 rabernat 1197350 shoyer 1217238
e7ec0870b15114b0443c28bf7e32d42717808c98 update links to https (#2872) 2019-04-07T19:55:07Z 2019-04-07T19:55:07Z Adam Leskis 3a70194d4c9de937c92029510f5fdf4bd9a7e974 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 lpmi-13 5070516 shoyer 1217238
23d54a890e6cfe1de420071b597c911164de4cb8 revert to 0.12.2 dev 2019-04-05T01:34:37Z 2019-04-05T01:34:37Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
aa6abb592ac2464170459ca96409398ec8b4593a 0.12.1 release 2019-04-05T01:31:26Z 2019-04-05T01:31:26Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
7d0e895fc27482256804303a16827feafc828595 Fixing deepcopy for Dataset.attrs (#2839) * Fixing deepcopy for Dataset.attrs + adjusting testcase * removing extra newlines * Updating whats-new * PEP8 * Adding attrs-test to the shallow copy testcase Removing additional argument of Dataset._replace * Rename _attrs -> attrs 2019-03-30T03:14:37Z 2019-03-30T03:14:37Z Andras Gefferth cba3551715bebac5e160a6414315ec4707c8625c Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 kefirbandi 1277781 shoyer 1217238
16a2c03bb23757a92f3f9b8e74c4d489e892e6d6 Allow expand_dims() method to support inserting/broadcasting dimensions with size>1 (#2757) * Quarter offset implemented (base is now latest pydata-master). (#2721) * Quarter offset implemented (base is now latest pydata-master). * Fixed issues raised in review (https://github.com/pydata/xarray/pull/2721#pullrequestreview-199346642) * Updated whats-new.rst with info on quarter offset support. * Updated whats-new.rst with info on quarter offset support. * Update doc/whats-new.rst Co-Authored-By: jwenfai <jwenfai@gmail.com> * Added support for quarter frequencies when resampling CFTimeIndex. Less redundancy in CFTimeIndex resampling tests. * Removed normalization code (unnecessary for cftime_range) in cftime_offsets.py. Removed redundant lines in whats-new.rst. * Removed invalid option from _get_day_of_month docstring. Added tests back in that raises ValueError when resampling (base=24 when resampling to daily freq, e.g., '8D'). * Minor edits to docstrings/comments * lint * Add `Dataset.drop_dims` (#2767) * ENH: Add Dataset.drop_dims() * Drops full dimensions and any corresponding variables in a Dataset * Fixes GH1949 * DOC: Add Dataset.drop_dims() documentation * Improve name concat (#2792) * Added tests of desired name inferring behaviour * Infers names * updated what's new * Don't use deprecated np.asscalar() (#2800) It got deprecated in numpy 1.16 and throws a ton of warnings due to that. All the function does is returning .item() anyway, which is why it got deprecated. * Add support for cftime.datetime coordinates with coarsen (#2778) * some docs updates (#2746) * Friendlier io title. * Fix lists. * Fix *args, **kwargs "inline emphasis..." * misc * Reference xarray_extras for csv writing. Closes #2289 * Add metpy accessor. Closes #461 * fix transpose docstring. Closes #2576 * Revert "Fix lists." This reverts commit 39983a5835612d7158ae91a9cce7196a03742983. * Revert "Fix *args, **kwargs" This reverts… 2019-03-26T02:41:47Z 2019-03-26T02:41:47Z Martin Pletcher 2bd739a8069ef73eb48e628beae21de3f0e8fd23 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 pletchm 10720577 shoyer 1217238
72e6208e59db14d0a707ae1fd401104da40d91b3 Fix formatting of engine parameter in docstrings (#2846) * Fix formatting of engine parameter in docstrings * Fix lint pep8 line length error 2019-03-25T02:30:00Z 2019-03-25T02:30:00Z Spencer Mathews 4c16066943840ffaec1185f10fc53678aa82ad24 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 spencermathews 1855348 shoyer 1217238
742ed3984f437982057fd46ecfb0bce214563cb8 Enable python 3.5.0-3.5.2 (#2831) * bump minimum python version to 3.5.3 * Revert "bump minimum python version to 3.5.3" This reverts commit 77553e17cf2126868d33616c349504e64c76e7b4. * guard typing import block * attempt to set patch version to 3.5.0 * "Type" also needs a guard * move 3.5.0 to py35-min * guiard all TYPE_CHECKING with new global * missing import * when two lines become one * formatting * two steps forward, one step back * Consolidate variables * lint 2019-03-22T04:37:24Z 2019-03-22T04:37:24Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
8126d3e623667930b1df43c2d936a0ba52a6ca19 use == to compare strings; `is` relies on interning (#2832) 2019-03-22T01:12:51Z 2019-03-22T01:12:51Z Maximilian Roos 279c587273ec459ffb5192e60bf8447c05601fa5 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 max-sixty 5635139 shoyer 1217238
55b8fe92473724ae03c93777e21fc7c36074188f DOC: Update donation links 2019-03-20T04:43:26Z 2019-03-20T04:43:26Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
a5ca64ac5988f0c9c9c6b741a5de16e81b90cad5 Rework whats-new for 0.12 2019-03-16T04:28:13Z 2019-03-16T04:28:13Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
0c9152c0413cd36df8f744a3b0e9c026d37d2b05 Add whats-new for 0.12.1 2019-03-16T04:16:05Z 2019-03-16T04:16:05Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
ad977c94eaaa1ad151bb46f2dad319566261c282 Release 0.12.0 2019-03-16T04:02:04Z 2019-03-16T04:02:04Z Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 Stephan Hoyer b3ac90e3a22acc66f9f523cc0d3c7e3fa6df7833 xarray 13221727 shoyer 1217238 shoyer 1217238
225868d232219440b188956531d5764ff4cd1b53 enable loading remote hdf5 files (#2782) * attempt at loading remote hdf5 * added a couple tests * rewind bytes after reading header * addressed comments for tests and error message * fixed pep8 formatting * created _get_engine_from_magic_number function, new tests * added description in whats-new * fixed test failure on windows * same error on windows and nix 2019-03-16T00:35:57Z 2019-03-16T00:35:57Z Scott Henderson afc51a0a930e9022c8c17f9692c71a87fd110afd Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 scottyhq 3924836 shoyer 1217238
0c534b00ef6463239320475eccd1ef3f12ebf6b7 Don't use deprecated np.asscalar() (#2800) It got deprecated in numpy 1.16 and throws a ton of warnings due to that. All the function does is returning .item() anyway, which is why it got deprecated. 2019-03-05T23:00:28Z 2019-03-05T23:00:28Z TimoRoth 497c631e870d9f32890ea22726b1548fef5e13de Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 TimoRoth 16896306 shoyer 1217238
c33dab237a0aca316b7f6d4ba10857829a895a25 Improve name concat (#2792) * Added tests of desired name inferring behaviour * Infers names * updated what's new 2019-03-04T05:39:20Z 2019-03-04T05:39:20Z Tom Nicholas 26a6f89d5f52aa3fe5267933be6139d10dfff2a7 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 TomNicholas 35968931 shoyer 1217238
e8eb83bd730f3697b7026d9e5ef770a5235020e3 Add `Dataset.drop_dims` (#2767) * ENH: Add Dataset.drop_dims() * Drops full dimensions and any corresponding variables in a Dataset * Fixes GH1949 * DOC: Add Dataset.drop_dims() documentation 2019-03-03T19:39:39Z 2019-03-03T19:39:39Z Kevin Squire 284ada1c0cd09f54299b826725ccfafcf61bdf58 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 kmsquire 223250 shoyer 1217238
57cd76d7521526a39a6e94eeacf1e40ef7b974b6 Bugfix/reduce no axis (#2769) * New test for reduce func which takes no axes * Fixed axis logic * Recorded fix in what's new * Added intermediate variable 2019-02-19T06:12:59Z 2019-02-19T06:12:59Z Tom Nicholas 26a6f89d5f52aa3fe5267933be6139d10dfff2a7 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 TomNicholas 35968931 shoyer 1217238

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