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| 6b33ad8b3e56834c3a345f21afc17680a164c5e9 | API for N-dimensional combine (#2616) * concatenates along a single dimension * Wrote function to find correct tile_IDs from nested list of datasets * Wrote function to check that combined_tile_ids structure is valid * Added test of 2d-concatenation * Tests now check that dataset ordering is correct * Test concatentation along a new dimension * Started generalising auto_combine to N-D by integrating the N-D concatentation algorithm * All unit tests now passing * Fixed a failing test which I didn't notice because I don't have pseudoNetCDF * Began updating open_mfdataset to handle N-D input * Refactored to remove duplicate logic in open_mfdataset & auto_combine * Implemented Shoyers suggestion in #2553 to rewrite the recursive nested list traverser as an iterator * --amend * Now raises ValueError if input not ordered correctly before concatenation * Added some more prototype tests defining desired behaviour more clearly * Now raises informative errors on invalid forms of input * Refactoring to alos merge along each dimension * Refactored to literally just apply the old auto_combine along each dimension * Added unit tests for open_mfdatset * Removed TODOs * Removed format strings * test_get_new_tile_ids now doesn't assume dicts are ordered * Fixed failing tests on python3.5 caused by accidentally assuming dict was ordered * Test for getting new tile id * Fixed itertoolz import so that it's compatible with older versions * Increased test coverage * Added toolz as an explicit dependency to pass tests on python2.7 * Updated 'what's new' * No longer attempts to shortcut all concatenation at once if concat_dims=None * Rewrote using itertools.groupby instead of toolz.itertoolz.groupby to remove hidden dependency on toolz * Fixed erroneous removal of utils import * Updated docstrings to include an example of multidimensional concatenation * Clarified auto_combine docstring for N-D behaviour * Added unit test for nested list of Datasets with different variables * Minor spelling and pep8 fixes * Started working on a new api with both auto_combine and manual_combine * Wrote basic function to infer concatenation order from coords. Needs better error handling though. * Attempt at finalised version of public-facing API. All the internals still need to be redone to match though. * No longer uses entire old auto_combine internally, only concat or merge * Updated what's new * Removed uneeded addition to what's new for old release * Fixed incomplete merge in docstring for open_mfdataset * Tests for manual combine passing * Tests for auto_combine now passing * xfailed weird behaviour with manual_combine trying to determine concat_dim * Add auto_combine and manual_combine to API page of docs * Tests now passing for open_mfdataset * Completed merge so that #2648 is respected, and added tests. Also moved concat to it's own file to avoid a circular dependency * Separated the tests for concat and both combines * Some PEP8 fixes * Pre-empting a test which will fail with opening uamiv format * Satisfy pep8speaks bot * Python 3.5 compatibile after changing some error string formatting * Order coords using pandas.Index objects * Fixed performance bug from GH #2662 * Removed ToDos about natural sorting of string coords * Generalized auto_combine to handle monotonically-decreasing coords too * Added more examples to docstring for manual_combine * Added note about globbing aspect of open_mfdataset * Removed auto-inferring of concatenation dimension in manual_combine * Added example to docstring for auto_combine * Minor correction to docstring * Another very minor docstring correction * Added test to guard against issue #2777 * Started deprecation cycle for auto_combine * Fully reverted open_mfdataset tests * Updated what's new to match deprecation cycle * Reverted uamiv test * Removed dependency on itertools * Deprecation tests fixed * Satisfy pycodestyle * Started deprecation cycle of auto_combine * Added specific error for edge case combine_manual can't handle * Check that global coordinates are monotonic * Highlighted weird behaviour when concatenating with no data variables * Added test for impossible-to-auto-combine coordinates * Removed uneeded test * Satisfy linter * Added airspeedvelocity benchmark for combining functions * Benchmark will take longer now * Updated version numbers in deprecation warnings to fit with recent release of 0.12 * Updated api docs for new function names * Fixed docs build failure * Revert "Fixed docs build failure" This reverts commit ddfc6dd1aa2d3164e1e2e7f090dac95e8789cc1c. * Updated documentation with section explaining new functions * Suppressed deprecation warnings in test suite * Resolved ToDo by pointing to issue with concat, see #2975 * Various docs fixes * Slightly renamed tests to match new name of tested function * Included minor suggestions from shoyer * Removed trailing whitespace * Simplified error message for case combine_manual can't handle * Removed filter for deprecation warnings, and added test for if user doesn't supply concat_dim * Simple fixes suggested by shoyer * Change deprecation warning behaviour * linting | 2019-06-25T15:14:34Z | 2019-06-25T15:14:34Z | 26a6f89d5f52aa3fe5267933be6139d10dfff2a7 | f10b21bed2846b879806f87039b77245b18e7671 | 13221727 | 35968931 | 1217238 |