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  • xarray 31

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  • fujiisoup · 31 ✖
sha message author_date ▲ committer_date raw_author raw_committer repo author committer
220adbc65e0b8c46feddaa6984df4a3a1ce0af6b sparse option to reindex and unstack (#3542) * Added fill_value for unstack * remove sparse option and fix unintended changes * a bug fix * Added sparse option to unstack and reindex * black * More tests * black * Remove sparse option from reindex * try __array_function__ where * flake8 2019-11-19T16:23:33Z 2019-11-19T16:23:33Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
492303924f4573173029aa9cf5a785413ee9d2ed Implement integrate (#2653) * added integrate. * Docs * Update via comment * Update via comments * integrate can accept multiple dimensions. * using set instead of list * dim -> coord 2019-01-31T17:30:30Z 2019-01-31T17:30:30Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
ede3e0101bae2f45c3f4634a1e1ecb8e2ccd0258 Added Coarsen (#2612) * Added variable.coarsen * Added DataArray.coarsen and Dataset.coarsen * pep8 * a bugfix for mpa3 * Support mean for datatime dtype * nanmean for DateTime * API updatedd via comments * bug fix in tests * updated docs * use pd.isnull rather than isnat * support Variable in datetime_to_numeric * use pd.isnull instead of numpy.isnat in test * Added an example to doc. * coordinate_func -> coord_func. Support 0d-array mean with datetime * Added an two dimensional example * flake8 * flake8 * a potential bug fix * Update via comments * Always use datetime64[ns] in mean * Added tests for 2d coarsen with value check * update via comment * whats new * typo fix 2019-01-06T09:13:45Z 2019-01-06T09:13:45Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
b5059a538ee2efda4d753cc9a49f8c09cd026c19 Fix multiindex selection (#2621) * Fix multiindex selection * Support pandas0.19 * a bugfix * Do remove_unused_levels only once in unstack. * import algos * Remove unused import * Adopt local import 2018-12-24T15:37:26Z 2018-12-24T15:37:26Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
7f20a20aa278d2bb056403d665c10e29968755cd Inhouse LooseVersion (#2477) * Inhouse LooseVersion * Made LooseVersion a function 2018-10-10T13:47:22Z 2018-10-10T13:47:22Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
cf1e6c73d0366124485c1d767b89ac1cc301705b pep8speaks (#2462) * yml for pep8speaks * Updated yml * Intensionally added a badly styled scripts * experimentally removed yml * .yml file taken from pandas-dev/pandas/.pep8speaks.yml * Undo inteded pep8 violation 2018-10-07T22:40:07Z 2018-10-07T22:40:07Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
ab96954883200f764a0dd50870e4db240c119265 implement Gradient (#2398) * Added xr.gradient, DataArray.gradient, Dataset.gradient * Working with np.backend * test is not passing * Docs * flake8 * support environment without dask * Support numpy < 1.13 * Support numpy 1.12 * simplify dask.gradient * lint * Use npcompat.gradient in tests * move gradient to dask_array_compat * gradient -> differentiate * lint * Update dask_array_compat * Added a link from diff * remove xr.differentiate * Added datetime support * Update via comment. Use utils.to_numeric also in interp * time_unit -> datetime_unit * Some more info in docs. * update test * Update via comments * Update docs. 2018-09-21T20:02:42Z 2018-09-21T20:02:42Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
f217a7d8675062aff14f3dc6fb008af0cba8da49 local flake8 (#2343) 2018-08-05T23:46:59Z 2018-08-05T23:46:59Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
98e6a4b84dd2cf4296a3e0aa9710bb79411354e4 reduce memory consumption. (#2220) 2018-06-08T01:31:18Z 2018-06-08T01:31:18Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
9a48157b525d9e346e73f358a99ceb52717fd3ea Raise an Error if a coordinate with wrong size is assigned to a dataarray (#2124) * fix * Fix DataArrayCoordinates._update_coords * Update misleading comments 2018-05-15T16:39:22Z 2018-05-15T16:39:22Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
f861186cbd11bdbfb2aab8289118a59283a2d7af Reduce pad size in rolling (#2125) 2018-05-13T22:37:47Z 2018-05-13T22:37:47Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
a52540505f606bd7619536d82d43f19f2cbe58b5 Fixes centerized rolling with bottleneck. Also, fixed rolling with an integer dask array. (#2122) 2018-05-12T06:15:54Z 2018-05-12T06:15:54Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
b9f40cc1da9c45b3dd33a3434b69c3d8fce57138 Fix a bug introduced in #2087 (#2100) * Bugfix introduced by #2087 * flake8 * Remove trailing whitespaces 2018-05-02T21:59:33Z 2018-05-02T21:59:33Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
54468e1924174a03e7ead3be8545f687f084f4dd Vectorized lazy indexing (#1899) * Start working * First support of lazy vectorized indexing. * Some optimization. * Use unique to decompose vectorized indexing. * Consolidate vectorizedIndexing * Support vectorized_indexing in h5py * Refactoring backend array. Added indexing.decompose_indexers. Drop unwrap_explicit_indexers. * typo * bugfix and typo * Fix based on @WeatherGod comments. * Use enum-like object to indicate indexing-support types. * Update test_decompose_indexers. * Bugfix and benchmarks. * fix: support outer/basic indexer in LazilyVectorizedIndexedArray * More comments. * Fixing style errors. * Remove unintended dupicate * combine indexers for on-memory np.ndarray. * fix whats new * fix pydap * Update comments. * Support VectorizedIndexing for rasterio. Some bugfix. * flake8 * More tests * Use LazilyIndexedArray for scalar array instead of loading. * Support negative step slice in rasterio. * Make slice-step always positive * Bugfix in slice-slice * Add pydap support. * Rename LazilyIndexedArray -> LazilyOuterIndexedArray. Remove duplicate in zarr.py * flake8 * Added transpose to LazilyOuterIndexedArray 2018-03-06T22:00:56Z 2018-03-06T22:00:56Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
350e97793f89ddd4097b97e0c4af735a5144be24 Fix doc for missing values. (#1950) * Fix doc for missing values. * Remove some methods from api-hidden * Fix for dask page. 2018-03-02T20:17:28Z 2018-03-02T20:17:28Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
243093cf814ffaae2a9ce08215632500fbebcf52 Fix rtd link on readme (#1943) 2018-02-27T04:27:23Z 2018-02-27T04:27:23Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
009291139fde0c859ee565141cdb3b6a3d28cba0 Added a link to the asv benchmark results in doc and README (#1858) 2018-01-25T17:46:12Z 2018-01-25T17:46:12Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
3bd704a4815ad2281e61eedcee3c7935789d410b Add dtype support for reduce methods. (#1841) * Add dtype support for reduce methods. * Use bottleneck if dtype == values.dtype * Change get -> pop * Update comments. * float128 -> float16 * ValueError -> TypeError * update test 2018-01-20T18:29:01Z 2018-01-20T18:29:01Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
ab0db05a58fd47fe895d1a85c09c37d96263d3b7 [WIP] Fix pydap array wrapper (#1776) * Added shape attribute * remove (maybe) unused dtype logic * Still debugging * Fix another bug. * len(axis) > 1 -> len(axis) > 0 * Revert unintended changes * Added a local test for pydap * Add whats new. Removed an old workaround. * Added lxml in the requirements. * Avoid parsing pydap attributes. * Make netcdf compatible * Remove unintended `print` * Remove manual attribute drop. Added a comments tests. 2018-01-09T01:48:12Z 2018-01-09T01:48:12Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
6463504ae7c6fd0c2250237a2a74baf1b707723a Fix unexpected loading after ``print`` (#1724) * Added test_ondisk_after_print in backend * Remove an unintended change. * remove conditional check. Use repr instead of print 2017-11-17T16:44:40Z 2017-11-17T16:44:40Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
fb6e13ec15e85bbeceedbcd754e063f6e5696bf7 Bugfix in broadcast_indexes (#1693) * A bug fix: wrong Indexer type is returned in `Variable._broadcast_indexes` * Added a high-level test in `test_backends.py` * Skip orthogonal_isel for PyNio backend. * Raises NotImplementedError with indexing PyNio backend * Remove unnecessary indexing type check. * Fix typo * Bugfix in LazilyIndexingArray and DaskIndexingAdapter * np.int -> np.integer * Update comment * Typo in comments * Improve tests 2017-11-07T20:41:43Z 2017-11-07T20:41:43Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
2a1d3928a0aa0e66fe0a2211a6c9f1d079404dff Support orthogonal indexing in MemoryCachedArray (Fix for #1429) (#1676) * Added as_indexable * Make NioArrayWrapper indexable. * Made ArrayWrapper raise NotImplementedError for VecotorizedIndexer. Added test for DaskIndexingAdaptor * Support pep8 * whats new * Adopt assert_identical than self.assertDatasetIdentical * Explicitly test vindex support of backend array wrappers. * Change NDArrayIndexable to Mixin * Add a validation in `as_compatible_data` * Make sanity check clean. Fix misspellings. * Revert an unintended change test_backends.py * Rename SUPPORT_ARRAY_TYPES -> NON_NUMPY_SUPPORTED_ARRAY_TYPES 2017-11-06T17:21:55Z 2017-11-06T17:21:55Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
f83361c76b6aa8cdba8923080bb6b98560cf3a96 Removed `.T` from __dir__ explicitly (#1677) * Explicitly remove `.T` from __dir__ * Changed whats new, refactored test, spell correction. 2017-11-01T00:48:41Z 2017-11-01T00:48:41Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
9763a66e0e4675e7adc3fff3830c62f0e31a2bb3 Support autocompletion dictionary access in ipython. (#1632) * Support autocompletion dictionary access in ipython. * Add self.dims to __dir__() * Support tab-autocompletion for coords and data_vars * Use assert over TestCase.assertTrue 2017-10-22T17:49:20Z 2017-10-22T17:49:20Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
9a0c744c8015345a6e892039d73eff40119bb66b indexing with broadcasting (#1639) * Implemented `_broadcast_indexes` in Variable.py * Diagonal indexing for Variable. * update _broadcast_indexes. update tests. * Support basic boolean indexing. * tests for dask-based Variable * Explicitly mark xfail flags * orthogonal indexing for dask. * Refactor DaskArrayAdapter * Added MissingDimensionsError. Improve DaskIndexingAdapter, Variable.__getitem__ * use `np.arange(*slice.indices(size))` rather than `np.arange(size)[slice]`. * Add orthogonalize_indexers * A bug fix. * Working with LazilyIndexedArray * Fix in LazilyIndexedArray. * add @requires_dask in test_variable * rename orthogonalize_indexers -> unbroadcast_indexers * Wrap LazilyIndexedArray so that it accepts broadcasted-indexers * small rename * Another small fix * Remove unused function. * Added _broadcast_indexes_1vector * Minor fix * Avoid doubly wrapping by LazilyIndexedArray * General orthogonal indexing for dask array. * Added base class IndexableArrayAdapter * Deprecate _unbroadcast_indexers and support IndexerTuple classes * removed unintended prints. * Some clean up. * Some small fix. * Care for boolean array. * Always map boolean index to integer array. * Takes care of boolean index in test_indexing * replace self.assertTrue by assert * Fix based on shoyer's comments. * Added `to_tuple()` method to IndexerTuple class. * Removed: 'orthogonal_indexer', 'canonicalize_indexer' * update IndexVariable.__getitem__ * Made to_tuple function. * BASIC_INDEXING_TYPES * Removed unused function from tests. * assert -> raise * Update Dataset.isel * Use `merge_variables` in checking the consistency. * Cleanup Dataset.__getitem__ * Add comment about why align() is unneeded * Ensure correct tests are run in test_variable.py * Support pointwise indexing with dask * Add a vindex routine for np.ndarray * Add an OrderedSet to xarray.core.utils * Support dask and numpy vindex … 2017-10-19T23:52:50Z 2017-10-19T23:52:49Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
25d1855e737444c156f50d1f37a67d9674a8bac5 Remove unused version check for pandas. (#1594) * Remove unused version check for pandas. * remove comment, consolidate examples 2017-09-27T02:10:57Z 2017-09-27T02:10:57Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
0b2424a1813bf1af712780c360a94a5588523adf Deprecate old pandas support (#1530) * Deprecate old numpy and pandas support. * Clean up npcompat * recover unintentionally deleted line * an empty commit to trigger ci. * remove nanprod. update what's new * Minor fix related to np.nanprod * Update installing.rst 2017-08-31T17:25:10Z 2017-08-31T17:25:10Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
e1982faf8e906ccdcb16b07462ffa77fd13bf69c Patch isel points (#1400) * patch to isel_points * make flake8 pass 2017-05-09T02:31:51Z 2017-05-09T02:31:51Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
f87bb0beadd937e3e9657e6d686a20b2bb288d2b Fix a typo (#1364) 2017-04-10T02:24:00Z 2017-04-10T02:24:00Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
444fce8a7ae26546e283a6876f003aafb84b7552 Support for DataArray.expand_dims() (#1347) * Started implementation. * An empty commit to trigger Travis rebuild. * Expand_dims implemented. * Use Variables.expand_dims * Fix the default naming scheme of xr.DataArray.dims * Deprecate default argument for expand_dims(dim) * Move expand_dims from DataArray into Dataset * Rename Variable.expand_dims -> Variable.set_dims * Negative axis support * Add IndexError. Slight code cleaning. * Small fix in docstrings. * Raise exception specific for xr.Dataset * Small cleanup. New section in reshaping.rst. 2017-04-10T01:01:54Z 2017-04-10T01:01:54Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238
09ef2c280677c45593d4f93a67962afc42abacf1 Added a support for Dataset.rolling. (#1289) * Added support for Dataset.rolling * Fixed an accidental bug in test_dataset.py * Dimension order is restored after Dataset.rolling. * Add some docstrings. Code clean up. * Make rolling_cls and groupby_cls private. * Removed another old-style call for the superclass method. * Fixed some breaks made by the previous merge. * Moved ImplementedArrayRolling into rolling * Made DatasetRolling utilize DataArrayRolling of each DataArrays. * Added 1 line to api.rst. * Updating test_dataset to catch #1278 * Test_dataset now tests bottleneck.move_var. * Raises an exception if no data_vars depend on the rolling-dims. * Fixed style issue and added docstring for inject_datasetrolling_methods * Recover unintended change. * An empty commit to trigger travicCI rebuild. * Recover test_assign_attrs which is deleted accidentaly. Some improvements based on shoyer's comments. * An empty commit to trigger Travis's rebuild 2017-03-31T03:10:44Z 2017-03-31T03:10:44Z Keisuke Fujii caabe6633d9bef7f2f52807cc5a1f477f3a077d4 Stephan Hoyer f10b21bed2846b879806f87039b77245b18e7671 xarray 13221727 fujiisoup 6815844 shoyer 1217238

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