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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at ▲ | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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204071440 | MDU6SXNzdWUyMDQwNzE0NDA= | 1240 | Cannot use xarrays own times for indexing | gerritholl 500246 | closed | 0 | 9 | 2017-01-30T17:12:08Z | 2020-08-28T09:48:56Z | 2018-03-18T21:04:07Z | CONTRIBUTOR | I need to get the first Δt from the start of my dataset, i.e. ``` In [282]: time = pd.date_range('2000-01-01', freq='H', periods=365 * 24) In [283]: ds = xarray.Dataset({'foo': ('time', np.arange(365 * 24)), 'time': time}) In [284]: ds.sel(time=slice(ds["time"][0], ds["time"][10]))TypeError Traceback (most recent call last) <ipython-input-284-a101e126e1b0> in <module>() ----> 1 ds.sel(time=slice(ds["time"][0], ds["time"][10])) /dev/shm/gerrit/venv/stable-3.5/lib/python3.5/site-packages/xarray/core/dataset.py in sel(self, method, tolerance, drop, indexers) 1180 """ 1181 pos_indexers, new_indexes = indexing.remap_label_indexers( -> 1182 self, indexers, method=method, tolerance=tolerance 1183 ) 1184 result = self.isel(drop=drop, pos_indexers) /dev/shm/gerrit/venv/stable-3.5/lib/python3.5/site-packages/xarray/core/indexing.py in remap_label_indexers(data_obj, indexers, method, tolerance) 286 else: 287 idxr, new_idx = convert_label_indexer(index, label, --> 288 dim, method, tolerance) 289 pos_indexers[dim] = idxr 290 if new_idx is not None: /dev/shm/gerrit/venv/stable-3.5/lib/python3.5/site-packages/xarray/core/indexing.py in convert_label_indexer(index, label, index_name, method, tolerance) 183 indexer = index.slice_indexer(_try_get_item(label.start), 184 _try_get_item(label.stop), --> 185 _try_get_item(label.step)) 186 if not isinstance(indexer, slice): 187 # unlike pandas, in xarray we never want to silently convert a slice /dev/shm/gerrit/venv/stable-3.5/lib/python3.5/site-packages/pandas/tseries/index.py in slice_indexer(self, start, end, step, kind) 1496 1497 try: -> 1498 return Index.slice_indexer(self, start, end, step, kind=kind) 1499 except KeyError: 1500 # For historical reasons DatetimeIndex by default supports /dev/shm/gerrit/venv/stable-3.5/lib/python3.5/site-packages/pandas/indexes/base.py in slice_indexer(self, start, end, step, kind) 2995 """ 2996 start_slice, end_slice = self.slice_locs(start, end, step=step, -> 2997 kind=kind) 2998 2999 # return a slice /dev/shm/gerrit/venv/stable-3.5/lib/python3.5/site-packages/pandas/indexes/base.py in slice_locs(self, start, end, step, kind) 3174 start_slice = None 3175 if start is not None: -> 3176 start_slice = self.get_slice_bound(start, 'left', kind) 3177 if start_slice is None: 3178 start_slice = 0 /dev/shm/gerrit/venv/stable-3.5/lib/python3.5/site-packages/pandas/indexes/base.py in get_slice_bound(self, label, side, kind) 3113 # For datetime indices label may be a string that has to be converted 3114 # to datetime boundary according to its resolution. -> 3115 label = self._maybe_cast_slice_bound(label, side, kind) 3116 3117 # we need to look up the label /dev/shm/gerrit/venv/stable-3.5/lib/python3.5/site-packages/pandas/tseries/index.py in _maybe_cast_slice_bound(self, label, side, kind) 1444 1445 if is_float(label) or isinstance(label, time) or is_integer(label): -> 1446 self._invalid_indexer('slice', label) 1447 1448 if isinstance(label, compat.string_types): /dev/shm/gerrit/venv/stable-3.5/lib/python3.5/site-packages/pandas/indexes/base.py in _invalid_indexer(self, form, key) 1282 "indexers [{key}] of {kind}".format( 1283 form=form, klass=type(self), key=key, -> 1284 kind=type(key))) 1285 1286 def get_duplicates(self): TypeError: cannot do slice indexing on <class 'pandas.tseries.index.DatetimeIndex'> with these indexers [946684800000000000] of <class 'int'> ``` |
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199188476 | MDU6SXNzdWUxOTkxODg0NzY= | 1194 | Use masked arrays while preserving int | gerritholl 500246 | open | 0 | 9 | 2017-01-06T12:40:22Z | 2020-03-29T20:37:29Z | CONTRIBUTOR | A great beauty of numpys masked arrays is that it works with any dtype, since it does not use ``` In [137]: x = arange(30, dtype="i1").reshape(3, 10) In [138]: xr.Dataset({"count": (["x", "y"], ma.masked_where(x%5>3, x))}, coords={"x": range(3), "y": ...: range(10)}) Out[138]: <xarray.Dataset> Dimensions: (x: 3, y: 10) Coordinates: * y (y) int64 0 1 2 3 4 5 6 7 8 9 * x (x) int64 0 1 2 Data variables: count (x, y) float64 0.0 1.0 2.0 3.0 nan 5.0 6.0 7.0 8.0 nan 10.0 ... ``` This happens in the function Such type “promotion” is unaffordable for me; the memory consumption of my multi-gigabyte arrays would explode by a factor 4. Secondly, many of my integer-dtype fields are bit arrays, for which floating point representation is not desirable. It would greatly benefit (See also: Stackoverflow question) |
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xarray 13221727 | issue | ||||||||
268487752 | MDU6SXNzdWUyNjg0ODc3NTI= | 1661 | da.plot.pcolormesh fails when there is a datetime coordinate | gerritholl 500246 | closed | 0 | 9 | 2017-10-25T17:44:38Z | 2017-10-29T17:28:55Z | 2017-10-29T17:28:55Z | CONTRIBUTOR |
``` $ cat mwe.py !/usr/bin/env python3.6import xarray import numpy da = xarray.DataArray( numpy.arange(3*4).reshape(3,4), dims=("x", "y"), coords={"x": [1,2,3], "y": [numpy.datetime64(f"2000-01-{x:02d}") for x in range(1, 5)]}) da.plot.pcolormesh() $ ./mwe.py Traceback (most recent call last): File "./mwe.py", line 13, in <module> da.plot.pcolormesh() File "/dev/shm/gerrit/venv/stable-3.6/lib/python3.6/site-packages/xarray/plot/plot.py", line 547, in plotmethod return newplotfunc(allargs) File "/dev/shm/gerrit/venv/stable-3.6/lib/python3.6/site-packages/xarray/plot/plot.py", line 500, in newplotfunc kwargs) File "/dev/shm/gerrit/venv/stable-3.6/lib/python3.6/site-packages/xarray/plot/plot.py", line 667, in pcolormesh primitive = ax.pcolormesh(x, y, z, kwargs) File "/dev/shm/gerrit/venv/stable-3.6/lib/python3.6/site-packages/matplotlib/init.py", line 1710, in inner return func(ax, *args, kwargs) File "/dev/shm/gerrit/venv/stable-3.6/lib/python3.6/site-packages/matplotlib/axes/_axes.py", line 5636, in pcolormesh coords = np.column_stack((X, Y)).astype(float, copy=False) File "/dev/shm/gerrit/venv/stable-3.6/lib/python3.6/site-packages/numpy/lib/shape_base.py", line 353, in column_stack return _nx.concatenate(arrays, 1) TypeError: invalid type promotion ``` |
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completed | xarray 13221727 | issue |
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