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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at ▲ | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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1442443970 | I_kwDOAMm_X85V-fLC | 7275 | REG: `nc_time_axis` not imported anymore | aulemahal 20629530 | closed | 0 | 1 | 2022-11-09T17:02:59Z | 2022-11-10T21:45:28Z | 2022-11-10T21:45:28Z | CONTRIBUTOR | What happened?With xarray 2022.11.0, plotting a DataArray with a It fails with a matplotlib error : What did you expect to happen?With previous versions of xarray, the Minimal Complete Verifiable Example
MVCE confirmation
Relevant log output```PythonTypeError Traceback (most recent call last) Cell In [1], line 7 1 import xarray as xr 2 da = xr.DataArray( 3 list(range(10)), 4 dims=('time',), 5 coords={'time': xr.cftime_range('1900-01-01', periods=10, calendar='noleap', freq='D')} 6 ) ----> 7 da.plot() File ~/mambaforge/envs/xclim/lib/python3.10/site-packages/xarray/plot/accessor.py:46, in DataArrayPlotAccessor.call(self, kwargs) 44 @functools.wraps(dataarray_plot.plot, assigned=("doc", "annotations")) 45 def call(self, kwargs) -> Any: ---> 46 return dataarray_plot.plot(self._da, **kwargs) File ~/mambaforge/envs/xclim/lib/python3.10/site-packages/xarray/plot/dataarray_plot.py:312, in plot(darray, row, col, col_wrap, ax, hue, subplot_kws, kwargs) 308 plotfunc = hist 310 kwargs["ax"] = ax --> 312 return plotfunc(darray, kwargs) File ~/mambaforge/envs/xclim/lib/python3.10/site-packages/xarray/plot/dataarray_plot.py:517, in line(darray, row, col, figsize, aspect, size, ax, hue, x, y, xincrease, yincrease, xscale, yscale, xticks, yticks, xlim, ylim, add_legend, _labels, args, kwargs) 513 ylabel = label_from_attrs(yplt, extra=y_suffix) 515 _ensure_plottable(xplt_val, yplt_val) --> 517 primitive = ax.plot(xplt_val, yplt_val, args, **kwargs) 519 if _labels: 520 if xlabel is not None: File ~/mambaforge/envs/xclim/lib/python3.10/site-packages/matplotlib/axes/_axes.py:1664, in Axes.plot(self, scalex, scaley, data, args, kwargs) 1662 lines = [self._get_lines(args, data=data, *kwargs)] 1663 for line in lines: -> 1664 self.add_line(line) 1665 if scalex: 1666 self._request_autoscale_view("x") File ~/mambaforge/envs/xclim/lib/python3.10/site-packages/matplotlib/axes/_base.py:2340, in _AxesBase.add_line(self, line) 2337 if line.get_clip_path() is None: 2338 line.set_clip_path(self.patch) -> 2340 self._update_line_limits(line) 2341 if not line.get_label(): 2342 line.set_label(f'_child{len(self._children)}') File ~/mambaforge/envs/xclim/lib/python3.10/site-packages/matplotlib/axes/_base.py:2363, in _AxesBase._update_line_limits(self, line) 2359 def _update_line_limits(self, line): 2360 """ 2361 Figures out the data limit of the given line, updating self.dataLim. 2362 """ -> 2363 path = line.get_path() 2364 if path.vertices.size == 0: 2365 return File ~/mambaforge/envs/xclim/lib/python3.10/site-packages/matplotlib/lines.py:1031, in Line2D.get_path(self)
1029 """Return the File ~/mambaforge/envs/xclim/lib/python3.10/site-packages/matplotlib/lines.py:659, in Line2D.recache(self, always) 657 if always or self._invalidx: 658 xconv = self.convert_xunits(self._xorig) --> 659 x = _to_unmasked_float_array(xconv).ravel() 660 else: 661 x = self._x File ~/mambaforge/envs/xclim/lib/python3.10/site-packages/matplotlib/cbook/init.py:1369, in _to_unmasked_float_array(x) 1367 return np.ma.asarray(x, float).filled(np.nan) 1368 else: -> 1369 return np.asarray(x, float) TypeError: float() argument must be a string or a real number, not 'cftime._cftime.DatetimeNoLeap' ``` Anything else we need to know?I suspect #7179. This line:
https://github.com/pydata/xarray/blob/cc7e09a3507fa342b3790b5c109e700fa12f0b17/xarray/plot/utils.py#L27
does not import Previously we had: https://github.com/pydata/xarray/blob/fc9026b59d38146a21769cc2d3026a12d58af059/xarray/plot/utils.py#L27-L32 where the package is always imported. Maybe there's a way to import Environment
INSTALLED VERSIONS
------------------
commit: None
python: 3.10.6 | packaged by conda-forge | (main, Aug 22 2022, 20:36:39) [GCC 10.4.0]
python-bits: 64
OS: Linux
OS-release: 6.0.5-200.fc36.x86_64
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: fr_CA.UTF-8
LOCALE: ('fr_CA', 'UTF-8')
libhdf5: 1.12.2
libnetcdf: 4.8.1
xarray: 2022.11.0
pandas: 1.5.1
numpy: 1.23.4
scipy: 1.8.1
netCDF4: 1.6.1
pydap: None
h5netcdf: None
h5py: None
Nio: None
zarr: None
cftime: 1.6.2
nc_time_axis: 1.4.1
PseudoNetCDF: None
rasterio: None
cfgrib: None
iris: None
bottleneck: 1.3.5
dask: 2022.10.2
distributed: 2022.10.2
matplotlib: 3.6.2
cartopy: None
seaborn: None
numbagg: None
fsspec: 2022.10.0
cupy: None
pint: 0.20.1
sparse: None
flox: None
numpy_groupies: None
setuptools: 65.5.1
pip: 22.3.1
conda: None
pytest: 7.2.0
IPython: 8.6.0
sphinx: 5.3.0
|
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completed | xarray 13221727 | issue | ||||||
1242388766 | I_kwDOAMm_X85KDVke | 6623 | Cftime arrays not supported by polyval | aulemahal 20629530 | closed | 0 | 1 | 2022-05-19T22:19:14Z | 2022-05-31T17:16:04Z | 2022-05-31T17:16:04Z | CONTRIBUTOR | What happened?I was trying to use polyval with a cftime coordinate and it failed with What did you expect to happen?A polynomial to be evaluated along my coordinate. Minimal Complete Verifiable Example```Python import xarray as xr import numpy as np use_cftime=False will workt = xr.date_range('2001-01-01', periods=100, use_cftime=True, freq='YS') da = xr.DataArray(np.arange(100) ** 3, dims=('time',), coords={'time': t}) coeffs = da.polyfit('time', 4) da2 = xr.polyval(da.time, coeffs).polyfit_coefficients ``` MVCE confirmation
Relevant log output```PythonTypeError Traceback (most recent call last) Input In [5], in <cell line: 4>() 2 da = xr.DataArray(np.arange(100) ** 3, dims=('time',), coords={'time': t}) 3 coeffs = da.polyfit('time', 4) ----> 4 da2 = xr.polyval(da.time, coeffs).polyfit_coefficients File ~/Python/xarray/xarray/core/computation.py:1931, in polyval(coord, coeffs, degree_dim) 1929 res = zeros_like(coord) + coeffs.isel({degree_dim: max_deg}, drop=True) 1930 for deg in range(max_deg - 1, -1, -1): -> 1931 res *= coord 1932 res += coeffs.isel({degree_dim: deg}, drop=True) 1934 return res File ~/Python/xarray/xarray/core/_typed_ops.py:103, in DatasetOpsMixin.imul(self, other) 102 def imul(self, other): --> 103 return self._inplace_binary_op(other, operator.imul) File ~/Python/xarray/xarray/core/dataset.py:6107, in Dataset._inplace_binary_op(self, other, f) 6105 other = other.reindex_like(self, copy=False) 6106 g = ops.inplace_to_noninplace_op(f) -> 6107 ds = self._calculate_binary_op(g, other, inplace=True) 6108 self._replace_with_new_dims( 6109 ds._variables, 6110 ds._coord_names, (...) 6113 inplace=True, 6114 ) 6115 return self File ~/Python/xarray/xarray/core/dataset.py:6154, in Dataset._calculate_binary_op(self, f, other, join, inplace) 6152 else: 6153 other_variable = getattr(other, "variable", other) -> 6154 new_vars = {k: f(self.variables[k], other_variable) for k in self.data_vars} 6155 ds._variables.update(new_vars) 6156 ds._dims = calculate_dimensions(ds._variables) File ~/Python/xarray/xarray/core/dataset.py:6154, in <dictcomp>(.0) 6152 else: 6153 other_variable = getattr(other, "variable", other) -> 6154 new_vars = {k: f(self.variables[k], other_variable) for k in self.data_vars} 6155 ds._variables.update(new_vars) 6156 ds._dims = calculate_dimensions(ds._variables) File ~/Python/xarray/xarray/core/_typed_ops.py:402, in VariableOpsMixin.mul(self, other) 401 def mul(self, other): --> 402 return self._binary_op(other, operator.mul) File ~/Python/xarray/xarray/core/variable.py:2494, in Variable._binary_op(self, other, f, reflexive) 2491 attrs = self._attrs if keep_attrs else None 2492 with np.errstate(all="ignore"): 2493 new_data = ( -> 2494 f(self_data, other_data) if not reflexive else f(other_data, self_data) 2495 ) 2496 result = Variable(dims, new_data, attrs=attrs) 2497 return result TypeError: unsupported operand type(s) for *: 'float' and 'cftime._cftime.DatetimeGregorian' ``` Anything else we need to know?I also noticed that since the Horner PR, Environment
INSTALLED VERSIONS
------------------
commit: None
python: 3.10.4 | packaged by conda-forge | (main, Mar 24 2022, 17:38:57) [GCC 10.3.0]
python-bits: 64
OS: Linux
OS-release: 3.10.0-1160.49.1.el7.x86_64
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_CA.UTF-8
LOCALE: ('en_CA', 'UTF-8')
libhdf5: 1.12.1
libnetcdf: 4.8.1
xarray: 2022.3.1.dev267+gd711d58
pandas: 1.4.2
numpy: 1.21.6
scipy: 1.8.0
netCDF4: 1.5.8
pydap: None
h5netcdf: None
h5py: 3.6.0
Nio: None
zarr: 2.11.3
cftime: 1.6.0
nc_time_axis: 1.4.1
PseudoNetCDF: None
rasterio: None
cfgrib: None
iris: None
bottleneck: 1.3.4
dask: 2022.04.1
distributed: 2022.4.1
matplotlib: 3.5.1
cartopy: 0.20.2
seaborn: None
numbagg: None
fsspec: 2022.3.0
cupy: None
pint: 0.19.2
sparse: 0.13.0
flox: 0.5.0
numpy_groupies: 0.9.15
setuptools: 62.1.0
pip: 22.0.4
conda: None
pytest: None
IPython: 8.2.0
sphinx: 4.5.0
|
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1175454678 | I_kwDOAMm_X85GEAPW | 6393 | DataArray groupby returning Dataset broken in some cases | aulemahal 20629530 | closed | 0 | 1 | 2022-03-21T14:17:25Z | 2022-03-21T15:26:20Z | 2022-03-21T15:26:20Z | CONTRIBUTOR | What happened?This is a the reverse problem of #6379, the What did you expect to happen?No response Minimal Complete Verifiable Example```Python import xarray as xr ds = xr.tutorial.open_dataset("air_temperature") ds.air.resample(time="YS").map(lambda grp: grp.mean("time").to_dataset()) ``` Relevant log output```PythonTypeError Traceback (most recent call last) Input In [3], in <module> ----> 1 ds.air.resample(time="YS").map(lambda grp: grp.mean("time").to_dataset()) File ~/Python/myxarray/xarray/core/resample.py:223, in DataArrayResample.map(self, func, shortcut, args, kwargs) 180 """Apply a function to each array in the group and concatenate them 181 together into a new array. 182 (...) 219 The result of splitting, applying and combining this array. 220 """ 221 # TODO: the argument order for Resample doesn't match that for its parent, 222 # GroupBy --> 223 combined = super().map(func, shortcut=shortcut, args=args, kwargs) 225 # If the aggregation function didn't drop the original resampling 226 # dimension, then we need to do so before we can rename the proxy 227 # dimension we used. 228 if self._dim in combined.coords: File ~/Python/myxarray/xarray/core/groupby.py:835, in DataArrayGroupByBase.map(self, func, shortcut, args, kwargs) 833 grouped = self._iter_grouped_shortcut() if shortcut else self._iter_grouped() 834 applied = (maybe_wrap_array(arr, func(arr, *args, kwargs)) for arr in grouped) --> 835 return self._combine(applied, shortcut=shortcut) File ~/Python/myxarray/xarray/core/groupby.py:869, in DataArrayGroupByBase._combine(self, applied, shortcut) 867 index, index_vars = create_default_index_implicit(coord) 868 indexes = {k: index for k in index_vars} --> 869 combined = combined._overwrite_indexes(indexes, coords=index_vars) 870 combined = self._maybe_restore_empty_groups(combined) 871 combined = self._maybe_unstack(combined) TypeError: _overwrite_indexes() got an unexpected keyword argument 'coords' ``` Anything else we need to know?I guess the same solution as #6386 could be used! Environment
INSTALLED VERSIONS
------------------
commit: None
python: 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48)
[GCC 9.3.0]
python-bits: 64
OS: Linux
OS-release: 5.16.13-arch1-1
machine: x86_64
processor:
byteorder: little
LC_ALL: None
LANG: fr_CA.utf8
LOCALE: ('fr_CA', 'UTF-8')
libhdf5: 1.12.0
libnetcdf: 4.7.4
xarray: 2022.3.1.dev16+g3ead17ea
pandas: 1.4.0
numpy: 1.20.3
scipy: 1.7.1
netCDF4: 1.5.7
pydap: None
h5netcdf: 0.11.0
h5py: 3.4.0
Nio: None
zarr: 2.10.0
cftime: 1.5.0
nc_time_axis: 1.3.1
PseudoNetCDF: None
rasterio: None
cfgrib: None
iris: None
bottleneck: 1.3.2
dask: 2021.08.0
distributed: 2021.08.0
matplotlib: 3.4.3
cartopy: None
seaborn: None
numbagg: None
fsspec: 2021.07.0
cupy: None
pint: 0.18
sparse: None
setuptools: 57.4.0
pip: 21.2.4
conda: None
pytest: 6.2.5
IPython: 8.0.1
sphinx: 4.1.2
|
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1173980959 | I_kwDOAMm_X85F-Ycf | 6379 | Dataset groupby returning DataArray broken in some cases | aulemahal 20629530 | closed | 0 | 1 | 2022-03-18T20:07:37Z | 2022-03-20T18:55:26Z | 2022-03-20T18:55:26Z | CONTRIBUTOR | What happened?Got a TypeError when resampling a dataset along a dimension, mapping a function to each group. The function returns a DataArray. Failed with : What did you expect to happen?This worked before the merging of #5692. A DataArray was returned as expected. Minimal Complete Verifiable Example```Python import xarray as xr ds = xr.tutorial.open_dataset("air_temperature") ds.resample(time="YS").map(lambda grp: grp.air.mean("time")) ``` Relevant log output```PythonTypeError Traceback (most recent call last) Input In [37], in <module> ----> 1 ds.resample(time="YS").map(lambda grp: grp.air.mean("time")) File /opt/miniconda3/envs/xclim-pip/lib/python3.9/site-packages/xarray/core/resample.py:300, in DatasetResample.map(self, func, args, shortcut, kwargs) 298 # ignore shortcut if set (for now) 299 applied = (func(ds, *args, kwargs) for ds in self._iter_grouped()) --> 300 combined = self._combine(applied) 302 return combined.rename({self._resample_dim: self._dim}) File /opt/miniconda3/envs/xclim-pip/lib/python3.9/site-packages/xarray/core/groupby.py:999, in DatasetGroupByBase._combine(self, applied) 997 index, index_vars = create_default_index_implicit(coord) 998 indexes = {k: index for k in index_vars} --> 999 combined = combined._overwrite_indexes(indexes, variables=index_vars) 1000 combined = self._maybe_restore_empty_groups(combined) 1001 combined = self._maybe_unstack(combined) TypeError: _overwrite_indexes() got an unexpected keyword argument 'variables' ``` Anything else we need to know?In the docstring of If the function passed to I may have time to help on this. Environment
INSTALLED VERSIONS
------------------
commit: None
python: 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48)
[GCC 9.3.0]
python-bits: 64
OS: Linux
OS-release: 5.16.13-arch1-1
machine: x86_64
processor:
byteorder: little
LC_ALL: None
LANG: fr_CA.utf8
LOCALE: ('fr_CA', 'UTF-8')
libhdf5: 1.12.0
libnetcdf: 4.7.4
xarray: 2022.3.1.dev16+g3ead17ea
pandas: 1.4.0
numpy: 1.20.3
scipy: 1.7.1
netCDF4: 1.5.7
pydap: None
h5netcdf: 0.11.0
h5py: 3.4.0
Nio: None
zarr: 2.10.0
cftime: 1.5.0
nc_time_axis: 1.3.1
PseudoNetCDF: None
rasterio: None
cfgrib: None
iris: None
bottleneck: 1.3.2
dask: 2021.08.0
distributed: 2021.08.0
matplotlib: 3.4.3
cartopy: None
seaborn: None
numbagg: None
fsspec: 2021.07.0
cupy: None
pint: 0.18
sparse: None
setuptools: 57.4.0
pip: 21.2.4
conda: None
pytest: 6.2.5
IPython: 8.0.1
sphinx: 4.1.2
|
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1173997225 | I_kwDOAMm_X85F-cap | 6380 | Attributes of concatenation coordinate are dropped | aulemahal 20629530 | closed | 0 | 1 | 2022-03-18T20:31:17Z | 2022-03-20T18:53:46Z | 2022-03-20T18:53:46Z | CONTRIBUTOR | What happened?When concatenating two objects with What did you expect to happen?I expected the concatenation coordinate to be identical to the 1D DataArray I gave to Minimal Complete Verifiable Example```Python import xarray as xr ds = xr.tutorial.open_dataset("air_temperature") concat_dim = xr.DataArray([1, 2], dims=("condim",), attrs={"an_attr": "yep"}, name="condim") out = xr.concat([ds, ds], concat_dim) out.condim.attrs ``` Before #5692, I get:
Anything else we need to know?I'm not 100% sure, but I think the change is due to If the solution is to add a check in Environment
INSTALLED VERSIONS
------------------
commit: None
python: 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48)
[GCC 9.3.0]
python-bits: 64
OS: Linux
OS-release: 5.16.13-arch1-1
machine: x86_64
processor:
byteorder: little
LC_ALL: None
LANG: fr_CA.utf8
LOCALE: ('fr_CA', 'UTF-8')
libhdf5: 1.12.0
libnetcdf: 4.7.4
xarray: 2022.3.1.dev16+g3ead17ea
pandas: 1.4.0
numpy: 1.20.3
scipy: 1.7.1
netCDF4: 1.5.7
pydap: None
h5netcdf: 0.11.0
h5py: 3.4.0
Nio: None
zarr: 2.10.0
cftime: 1.5.0
nc_time_axis: 1.3.1
PseudoNetCDF: None
rasterio: None
cfgrib: None
iris: None
bottleneck: 1.3.2
dask: 2021.08.0
distributed: 2021.08.0
matplotlib: 3.4.3
cartopy: None
seaborn: None
numbagg: None
fsspec: 2021.07.0
cupy: None
pint: 0.18
sparse: None
setuptools: 57.4.0
pip: 21.2.4
conda: None
pytest: 6.2.5
IPython: 8.0.1
sphinx: 4.1.2
|
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635542241 | MDExOlB1bGxSZXF1ZXN0NDMxODg5NjQ0 | 4135 | Correct dask handling for 1D idxmax/min on ND data | aulemahal 20629530 | closed | 0 | 1 | 2020-06-09T15:36:09Z | 2020-06-25T16:09:59Z | 2020-06-25T03:59:52Z | CONTRIBUTOR | 0 | pydata/xarray/pulls/4135 |
Based on comments on dask/dask#3096, I fixed the dask indexing error that occurred when I believe this doesn't conflict with #3936. |
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xarray 13221727 | pull |
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