issues: 149569350
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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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149569350 | MDU6SXNzdWUxNDk1NjkzNTA= | 834 | open_dataset error, "UnicodeEncodeError: 'ascii' codec can't encode character u'\ufffd' .." | 742403 | closed | 0 | 4 | 2016-04-19T20:06:04Z | 2016-07-24T02:55:41Z | 2016-07-24T02:55:41Z | NONE | I have a netcdf file I downloaded. When I try to open it with I couldn't find any references to this error in xarray, either on this list or Google. The only somewhat/indirectly related github issue I found might be #681 (closed). Using ncdump and the netCDF4 package, I'm almost certain the problem is a non-ascii long dash character in the "Abstract" global attribute. netCDF4 doesn't throw an error when opening the file or viewing the Abstract attribute. None of the Any tips? I can now get at the data using netCDF4, but I'd prefer to have the convenience of xarray datasets. The only way I can think of is to first create a new version of the nc file where I drop the offending global attribute. ``` python ds = xray.open_dataset(os.path.join(pth, 'Aragonite.nc')) UnicodeEncodeError Traceback (most recent call last) /home/mayorga/miniconda/envs/bigcz/lib/python2.7/site-packages/IPython/core/formatters.pyc in call(self, obj) 697 type_pprinters=self.type_printers, 698 deferred_pprinters=self.deferred_printers) --> 699 printer.pretty(obj) 700 printer.flush() 701 return stream.getvalue() /home/mayorga/miniconda/envs/bigcz/lib/python2.7/site-packages/IPython/lib/pretty.pyc in pretty(self, obj) 381 if callable(meth): 382 return meth(obj, self, cycle) --> 383 return _default_pprint(obj, self, cycle) 384 finally: 385 self.end_group() /home/mayorga/miniconda/envs/bigcz/lib/python2.7/site-packages/IPython/lib/pretty.pyc in default_pprint(obj, p, cycle) 501 if _safe_getattr(klass, '__repr__', None) not in _baseclass_reprs: 502 # A user-provided repr. Find newlines and replace them with p.break() --> 503 _repr_pprint(obj, p, cycle) 504 return 505 p.begin_group(1, '<') /home/mayorga/miniconda/envs/bigcz/lib/python2.7/site-packages/IPython/lib/pretty.pyc in repr_pprint(obj, p, cycle) 692 """A pprint that just redirects to the normal repr function.""" 693 # Find newlines and replace them with p.break() --> 694 output = repr(obj) 695 for idx,output_line in enumerate(output.splitlines()): 696 if idx: /home/mayorga/miniconda/envs/bigcz/lib/python2.7/site-packages/xarray/core/dataset.pyc in repr(self) 790 791 def repr(self): --> 792 return formatting.dataset_repr(self) 793 794 @property /home/mayorga/miniconda/envs/bigcz/lib/python2.7/site-packages/xarray/core/formatting.pyc in dataset_repr(ds) 274 summary.append(vars_repr(ds.data_vars, col_width=col_width)) 275 if ds.attrs: --> 276 summary.append(attrs_repr(ds.attrs)) 277 278 return '\n'.join(summary) /home/mayorga/miniconda/envs/bigcz/lib/python2.7/site-packages/xarray/core/formatting.pyc in _mapping_repr(mapping, title, summarizer, col_width) 208 summary = ['%s:' % title] 209 if mapping: --> 210 summary += [summarizer(k, v, col_width) for k, v in mapping.items()] 211 else: 212 summary += [EMPTY_REPR] /home/mayorga/miniconda/envs/bigcz/lib/python2.7/site-packages/xarray/core/formatting.pyc in summarize_attr(key, value, col_width) 191 def summarize_attr(key, value, col_width=None): 192 # ignore col_width for now to more clearly distinguish attributes --> 193 return ' %s: %s' % (key, _maybe_truncate(value)) 194 195 /home/mayorga/miniconda/envs/bigcz/lib/python2.7/site-packages/xarray/core/formatting.pyc in _maybe_truncate(obj, maxlen) 183 184 def _maybe_truncate(obj, maxlen=500): --> 185 s = str(obj) 186 if len(s) > maxlen: 187 s = s[:(maxlen - 3)] + '...' UnicodeEncodeError: 'ascii' codec can't encode character u'\ufffd' in position 752: ordinal not in range(128) ``` |
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completed | 13221727 | issue |