id,node_id,number,title,user,state,locked,assignee,milestone,comments,created_at,updated_at,closed_at,author_association,active_lock_reason,draft,pull_request,body,reactions,performed_via_github_app,state_reason,repo,type 498180644,MDU6SXNzdWU0OTgxODA2NDQ=,3342,Error when using xarray's built in interp function with dask chunking,20382006,closed,0,,,4,2019-09-25T10:00:13Z,2019-09-26T13:56:19Z,2019-09-26T13:56:19Z,NONE,,,,"This is a copied issue posted on stack overflow: https://stackoverflow.com/questions/57572433/error-when-using-xarrays-built-in-interp-function-with-dask I am trying to use xarray's interp function together with the chunk function, which is a dask array feature. Taking the example under 'Example' at http://xarray.pydata.org/en/stable/interpolation.html I am able to use the interp function just fine. The simplified code I use to do this is: ``` at = xr.tutorial.open_dataset('air_temperature').isel(time=0) x = np.linspace(240, 300, 100) z = np.linspace(20, 70, 100) lat = xr.DataArray(z, dims=['z'], coords={'z': z}) lon = xr.DataArray((x[:, np.newaxis]-270)/np.cos(z*np.pi/180)+270, dims=['x', 'z'], coords={'x': x, 'z': z}) dsi = at.interp(lon=lon, lat=lat)` ``` The problem arises when I try to combine this interp function with xarray chunk by modifying the above code in the following way: ``` at = xr.tutorial.open_dataset('air_temperature').isel(time=0) at = at.chunk({'lat':10}) # added chunking inducing a dask array x = np.linspace(240, 300, 100) z = np.linspace(20, 70, 100) lat = xr.DataArray(z, dims=['z'], coords={'z': z}) lon = xr.DataArray((x[:, np.newaxis]-270)/np.cos(z*np.pi/180)+270, dims=['x', 'z'], coords={'x': x, 'z': z}) dsi = at.interp(lon=lon, lat=lat) ``` The code fails at line ``` dsi = at.interp(lon=lon, lat=lat) ``` The error I get is: _ValueError: Can't specify drop_axis and new_axis together_ I think what is happening is that the interp function is replacing a coordinate and dask cannot deal with this. Is this a bug that needs fixing within xarray or is there something that I have done wrong? #### Output of ``xr.show_versions()``
INSTALLED VERSIONS ------------------ commit: None python: 3.6.6 |Anaconda custom (64-bit)| (default, Oct 9 2018, 12:34:16) [GCC 7.3.0] python-bits: 64 OS: Linux OS-release: 3.10.0-957.5.1.el7.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_GB.UTF-8 LOCALE: en_GB.UTF-8 libhdf5: 1.8.18 libnetcdf: 4.4.1.1 xarray: 0.12.3 pandas: 0.25.0 numpy: 1.16.4 scipy: 1.3.0 netCDF4: 1.3.1 pydap: None h5netcdf: None h5py: None Nio: None zarr: None cftime: None nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 0.13.0 distributed: None matplotlib: 2.2.2 cartopy: None seaborn: 0.7.1 numbagg: None setuptools: 40.8.0 pip: 9.0.1 conda: 4.7.11 pytest: 3.0.5 IPython: 5.1.0 sphinx: 1.5.1
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