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id ▼ node_id number state locked title user body created_at updated_at closed_at merged_at merge_commit_sha assignee milestone draft head base author_association auto_merge repo url merged_by
514633891 MDExOlB1bGxSZXF1ZXN0NTE0NjMzODkx 4560 closed 0 Optimize slice_slice for faster isel of huge datasets dionhaefner 11994217 I noticed that reading small slices of huge datasets (>1e8 rows) was very slow, even if they were properly chunked. I traced the issue back to `xarray.core.indexing.slice_slice`, which essentially calls `np.arange(ds_size)` to compute a slice. This is obviously `O(ds_size)`, even if the actual slice to be read is tiny. You can see the issue in this gist: https://gist.github.com/dionhaefner/a3e97bae0a4e28f0d39294074419a683 I took the liberty to optimize the function by computing the resulting slice arithmetically. With this in place, reading from disk is now the bottleneck as it should be. I saw performance increases by about a factor of 10, but this obviously varies with dimension size, slice size, and chunk size. --- <!-- Feel free to remove check-list items aren't relevant to your change --> - [x] Passes `isort . && black . && mypy . && flake8` 2020-11-03T10:26:38Z 2020-11-05T19:45:44Z 2020-11-05T19:07:24Z 2020-11-05T19:07:23Z 235b2e5bcec253ca6a85762323121d28c3b06038     0 86c56ca4b9e8d01136a7eed90160723e7535f0d2 83884a1c6dac4b5f6309dfea530414facc100bc8 CONTRIBUTOR   xarray 13221727 https://github.com/pydata/xarray/pull/4560  

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CREATE TABLE [pull_requests] (
   [id] INTEGER PRIMARY KEY,
   [node_id] TEXT,
   [number] INTEGER,
   [state] TEXT,
   [locked] INTEGER,
   [title] TEXT,
   [user] INTEGER REFERENCES [users]([id]),
   [body] TEXT,
   [created_at] TEXT,
   [updated_at] TEXT,
   [closed_at] TEXT,
   [merged_at] TEXT,
   [merge_commit_sha] TEXT,
   [assignee] INTEGER REFERENCES [users]([id]),
   [milestone] INTEGER REFERENCES [milestones]([id]),
   [draft] INTEGER,
   [head] TEXT,
   [base] TEXT,
   [author_association] TEXT,
   [auto_merge] TEXT,
   [repo] INTEGER REFERENCES [repos]([id]),
   [url] TEXT,
   [merged_by] INTEGER REFERENCES [users]([id])
);
CREATE INDEX [idx_pull_requests_merged_by]
    ON [pull_requests] ([merged_by]);
CREATE INDEX [idx_pull_requests_repo]
    ON [pull_requests] ([repo]);
CREATE INDEX [idx_pull_requests_milestone]
    ON [pull_requests] ([milestone]);
CREATE INDEX [idx_pull_requests_assignee]
    ON [pull_requests] ([assignee]);
CREATE INDEX [idx_pull_requests_user]
    ON [pull_requests] ([user]);