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id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
1757818699 PR_kwDOAMm_X85TCxk8 7920 Fix regression with grouper object on an IndexVariable mwtoews 895458 closed 0     5 2023-06-14T23:57:40Z 2023-06-22T18:00:31Z 2023-06-22T16:10:12Z CONTRIBUTOR   0 pydata/xarray/pulls/7920
  • [X] Closes #7919
  • [X] Tests added
  • [ ] User visible changes (including notable bug fixes) are documented in whats-new.rst
  • [ ] New functions/methods are listed in api.rst
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    xarray 13221727 pull
1757661617 I_kwDOAMm_X85ow8mx 7919 Grouper object does not handle IndexVariable mwtoews 895458 closed 0     2 2023-06-14T21:17:55Z 2023-06-22T16:10:13Z 2023-06-22T16:10:13Z CONTRIBUTOR      

What happened?

Since #7561 with xarray-2023.5.0, the new grouper object raises an unexpected exception with an IndexVariable.

What did you expect to happen?

With xarray-2023.3.0 there was no issue, the grouper operation returned a new DataArray object.

Minimal Complete Verifiable Example

```Python import numpy as np import pandas as pd import xarray as xr

da = xr.DataArray( np.linspace(0, 1826, num=1827), coords=[pd.date_range("2000-01-01", "2004-12-31", freq="D")], dims="time", ) iv = xr.IndexVariable(dims=("time",), data=pd.Index(da.time.dt.year))

This is where the exception is raised

m = da.groupby(iv).mean() print(m) ```

MVCE confirmation

  • [X] Minimal example — the example is as focused as reasonably possible to demonstrate the underlying issue in xarray.
  • [X] Complete example — the example is self-contained, including all data and the text of any traceback.
  • [X] Verifiable example — the example copy & pastes into an IPython prompt or Binder notebook, returning the result.
  • [X] New issue — a search of GitHub Issues suggests this is not a duplicate.

Relevant log output

```Python

UnboundLocalError Traceback (most recent call last) Cell In[1], line 13 10 iv = xr.IndexVariable(dims=("time",), data=pd.Index(da.time.dt.year)) 12 # This is where the exception is raised ---> 13 m = da.groupby(iv).mean() 14 print(m)

File /tmp/py310/lib/python3.10/site-packages/xarray/core/dataarray.py:6503, in DataArray.groupby(self, group, squeeze, restore_coord_dims) 6495 from xarray.core.groupby import ( 6496 DataArrayGroupBy, 6497 ResolvedUniqueGrouper, 6498 UniqueGrouper, 6499 _validate_groupby_squeeze, 6500 ) 6502 _validate_groupby_squeeze(squeeze) -> 6503 rgrouper = ResolvedUniqueGrouper(UniqueGrouper(), group, self) 6504 return DataArrayGroupBy( 6505 self, 6506 (rgrouper,), 6507 squeeze=squeeze, 6508 restore_coord_dims=restore_coord_dims, 6509 )

File <string>:6, in init(self, grouper, group, obj)

File /tmp/py310/lib/python3.10/site-packages/xarray/core/groupby.py:335, in ResolvedGrouper.post_init(self) 334 def post_init(self) -> None: --> 335 self.group: T_Group = _resolve_group(self.obj, self.group) 337 ( 338 self.group1d, 339 self.stacked_obj, 340 self.stacked_dim, 341 self.inserted_dims, 342 ) = _ensure_1d(group=self.group, obj=self.obj)

File /tmp/py310/lib/python3.10/site-packages/xarray/core/groupby.py:640, in _resolve_group(obj, group) 637 else: 638 newgroup = group --> 640 if newgroup.size == 0: 641 raise ValueError(f"{newgroup.name} must not be empty") 643 return newgroup

UnboundLocalError: local variable 'newgroup' referenced before assignment ```

Anything else we need to know?

With xarray-2023.3.0 the output for the example is: <xarray.DataArray (time: 5)> array([ 182.5, 548. , 913. , 1278. , 1643.5]) Coordinates: * time (time) int64 2000 2001 2002 2003 2004

Environment

INSTALLED VERSIONS ------------------ commit: None python: 3.10.6 (main, Mar 10 2023, 10:55:28) [GCC 11.3.0] python-bits: 64 OS: Linux OS-release: 4.4.0-19041-Microsoft machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: C.UTF-8 LOCALE: ('en_US', 'UTF-8') libhdf5: None libnetcdf: None xarray: 2023.5.0 pandas: 1.5.3 numpy: 1.24.3 scipy: None netCDF4: None pydap: None h5netcdf: None h5py: None Nio: None zarr: None cftime: None nc_time_axis: None PseudoNetCDF: None iris: None bottleneck: None dask: None distributed: None matplotlib: 3.7.1 cartopy: None seaborn: None numbagg: None fsspec: None cupy: None pint: None sparse: None flox: None numpy_groupies: None setuptools: 59.6.0 pip: 23.1.2 conda: None pytest: 7.3.1 mypy: None IPython: 8.13.2 sphinx: None
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  completed xarray 13221727 issue
1434498245 PR_kwDOAMm_X85CINe7 7253 Remove setuptools-scm-git-archive, require setuptools-scm>=7 mwtoews 895458 closed 0     2 2022-11-03T11:22:31Z 2022-12-01T19:17:38Z 2022-12-01T19:17:37Z CONTRIBUTOR   0 pydata/xarray/pulls/7253

Since June 2022, setuptools_scm_git_archive is obsolete since "setuptools_scm >= 7.0.0 supports Git archives by itself".

This PR follows the migration guide to update .git_archival.txt, and establish setuptools-scm>=7 in pyproject.toml.

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    xarray 13221727 pull
1359451944 PR_kwDOAMm_X84-Pkru 6979 Remove unnecessary build dependencies, use build defaults, strict twine check mwtoews 895458 closed 0     3 2022-09-01T21:58:42Z 2022-09-10T07:34:25Z 2022-09-10T06:13:28Z CONTRIBUTOR   0 pydata/xarray/pulls/6979

This PR does a few related things:

  • Remove wheel from pyproject.toml, since it is no longer needed/documented (e.g. here), and rename other dependencies to their names in PyPI
  • Remove pip install build dependencies already specified in pyproject.toml
  • Remove check-manifest, since it isn't used
  • The command python -m build has defaults to build both sdist and wheel outputs
  • Use twine check --strict to return non-zero status on warnings
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    xarray 13221727 pull
1359532011 PR_kwDOAMm_X84-P2pa 6980 Improve CITATION.cff, specify license version in metadata mwtoews 895458 closed 0     1 2022-09-01T23:28:51Z 2022-09-03T18:11:29Z 2022-09-03T13:19:44Z CONTRIBUTOR   0 pydata/xarray/pulls/6980

This PR improves CITATION.cff to add abstract, license and repository-code fields, and to modify url to https://xarray.dev/

Also, update the metadata licence from "Apache", to "Apache-2.0", which is the short identifier defined by SPDX.

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    xarray 13221727 pull
1031275532 PR_kwDOAMm_X84tbs_K 5879 Check for path-like objects rather than Path type, use os.fspath mwtoews 895458 closed 0     14 2021-10-20T11:05:56Z 2022-03-31T21:41:32Z 2021-10-27T22:38:21Z CONTRIBUTOR   0 pydata/xarray/pulls/5879

This PR generally changes (e.g.) isinstance(filename, pathlib.Path) to isinstance(filename, os.PathLike), and uses os.fspath to convert it to (usually) str type.

(If it is vital these are always str, then should os.fsdecode be considered? bytes paths are not common, and only possible on some platforms).

If other path-like objects are used e.g. py.path used by the tmpdir pytest fixture, an error message is shown:

ValueError: can only read bytes or file-like objects with engine='scipy' or 'h5netcdf'

This PR allows other path-like objects to be used.

A few typing objects are also adjusted too.


Be aware there are file-like and path-like object terms used in the core Python glossary. In light of this, some "file-like" wordings may need to be adjusted, such as the error message described above. This can be done in this PR if anyone aggrees.

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    xarray 13221727 pull
995409132 MDExOlB1bGxSZXF1ZXN0NzMzMTc1MDAw 5793 MAINT: IOError -> OSError mwtoews 895458 closed 0     6 2021-09-13T22:51:45Z 2021-09-15T20:55:07Z 2021-09-15T18:18:30Z CONTRIBUTOR   0 pydata/xarray/pulls/5793

IOError has been an alias of OSError since Python 3.3 (see PEP 3151).

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    xarray 13221727 pull

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