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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at ▲ | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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1768118776 | I_kwDOAMm_X85pY1n4 | 7935 | Interpolation loses edge points | rjp23 31730876 | open | 0 | 0 | 2023-06-21T17:51:13Z | 2023-06-21T17:51:13Z | NONE | What happened?I'm not sure if this is a bug, normal behaviour or a feature request but if it's expected behaviour, it should be better documented. I want to interpolate a 2D dataset to a finer spatial grid. I've put together a reproducible example based on the tutorial here: https://docs.xarray.dev/en/stable/user-guide/interpolation.html The result is this:
When I do this, the edge points are lost (as you can see on the west/north boundaries here). What did you expect to happen?I'd expect the interpolation to protect the boundary points and not lose them. Minimal Complete Verifiable Example```Python ds = xr.tutorial.load_dataset("air_temperature") subplot_kw = dict(projection=ccrs.PlateCarree()) new_lon = np.linspace(ds.lon[0], ds.lon[-1], ds.dims["lon"] * 4) new_lat = np.linspace(ds.lat[0], ds.lat[-1], ds.dims["lat"] * 4) dsi = ds.interp(lat=new_lat, lon=new_lon, method='nearest', kwargs={'fill_value':None}) fig, axes = plt.subplots(1, 2, figsize=(18, 12), subplot_kw=subplot_kw) axes = np.ravel(axes) ax = axes[1] ds.air.isel(time=0).plot(x='lon', y='lat', ax=ax, add_colorbar=False) ax.set_extent([ds.lon.min()-5., ds.lon.min()+20., ds.lat.max()-20, ds.lat.max()+5]) ax.coastlines() ax = axes[0] dsi.air.isel(time=0).plot(x='lon', y='lat', ax=ax, add_colorbar=False) ax.set_extent([ds.lon.min()-5., ds.lon.min()+20., ds.lat.max()-20, ds.lat.max()+5]) ax.coastlines() plt.show() ``` MVCE confirmation
Relevant log outputNo response Anything else we need to know?No response Environment
INSTALLED VERSIONS
------------------
commit: None
python: 3.7.8 | packaged by conda-forge | (default, Jul 31 2020, 02:25:08)
[GCC 7.5.0]
python-bits: 64
OS: Linux
OS-release: 3.10.0-1160.90.1.el7.x86_64
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_GB.UTF-8
LOCALE: en_GB.UTF-8
libhdf5: 1.10.6
libnetcdf: 4.7.4
xarray: 0.16.1
pandas: 1.1.3
numpy: 1.19.2
scipy: 1.5.2
netCDF4: 1.5.4
pydap: None
h5netcdf: None
h5py: 2.10.0
Nio: None
zarr: None
cftime: 1.2.1
nc_time_axis: 1.2.0
PseudoNetCDF: None
rasterio: 1.1.8
cfgrib: None
iris: 2.4.0
bottleneck: None
dask: 2.30.0
distributed: 2.30.0
matplotlib: 3.3.2
cartopy: 0.18.0
seaborn: 0.11.0
numbagg: None
pint: None
setuptools: 49.6.0.post20201009
pip: 20.2.3
conda: None
pytest: None
IPython: 5.8.0
sphinx: None
|
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xarray 13221727 | issue | ||||||||
618141254 | MDU6SXNzdWU2MTgxNDEyNTQ= | 4061 | Colormap Normalisation Giving Unexpected/Incorrect Output | rjp23 31730876 | open | 0 | 11 | 2020-05-14T11:10:53Z | 2023-03-10T16:10:44Z | NONE | The behaviour when specifying "norm" for a colormap normalisation does not work as anticipated. Below I use the example code from matplotlib and apply the same normalisation to the DataArray version of the data but get very different results. MCVE Code Sample```python import numpy as np import matplotlib.pyplot as plt import matplotlib.colors as colors import xarray example from https://matplotlib.org/3.1.1/tutorials/colors/colormapnorms.htmlfor colormap normalisationN = 100 X, Y = np.mgrid[-3:3:complex(0, N), -2:2:complex(0, N)] Z1 = np.exp(-X2 - Y2) Z2 = np.exp(-(X - 1)2 - (Y - 1)2) Z = (Z1 - Z2) * 2 fig, ax = plt.subplots(2, 1, figsize=(8, 8)) ax = ax.flatten() bounds = np.linspace(-1, 1, 10) norm = colors.BoundaryNorm(boundaries=bounds, ncolors=256) ax[0].pcolormesh(X, Y, Z, norm=norm, cmap='RdBu_r') now add data into dataset and plot it using same normalisationdata = xarray.DataArray(Z, dims=('x', 'y'), coords={'x': X[:,0], 'y': Y[0,:]}) data.plot(ax=ax[1], x='x', y='y', norm=norm, add_colorbar=False) plt.show() ``` Expected OutputTop is expected, bottom is actual Problem DescriptionColormap normalisation appears to be broken in xarray VersionsOutput of <tt>xr.show_versions()</tt>xarray.show_versions() INSTALLED VERSIONS ------------------ commit: None python: 3.7.3 | packaged by conda-forge | (default, Jul 1 2019, 21:52:21) [GCC 7.3.0] python-bits: 64 OS: Linux OS-release: 3.10.0-957.21.3.el7.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_GB.UTF-8 LOCALE: en_GB.UTF-8 libhdf5: 1.10.4 libnetcdf: 4.6.2 xarray: 0.15.1 pandas: 0.25.1 numpy: 1.17.2 scipy: 1.3.1 netCDF4: 1.5.1.2 pydap: None h5netcdf: None h5py: 2.9.0 Nio: None zarr: None cftime: 1.0.3.4 nc_time_axis: None PseudoNetCDF: None rasterio: 1.0.28 cfgrib: None iris: 2.2.0 bottleneck: None dask: 2.5.2 distributed: 2.5.2 matplotlib: 3.1.1 cartopy: 0.17.0 seaborn: 0.9.0 numbagg: None setuptools: 41.4.0 pip: 19.2.3 conda: None pytest: None IPython: 7.8.0 sphinx: None |
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xarray 13221727 | issue |
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