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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at ▲ | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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1323734180 | I_kwDOAMm_X85O5pSk | 6854 | test_open_nczarr uses too much memory | QuLogic 302469 | closed | 0 | 8 | 2022-08-01T03:02:27Z | 2023-05-08T09:42:09Z | 2023-05-08T09:42:08Z | CONTRIBUTOR | What happened?I'm updating builds for Fedora to 2022.06.0, and running tests, the process runs out of memory and is OOM-killed. Running all the steps manually, this gets to the What did you expect to happen?Tests pass without issue. Minimal Complete Verifiable Example
MVCE confirmation
Relevant log output
Anything else we need to know?No response Environment
INSTALLED VERSIONS
------------------
commit: None
python: 3.11.0b5 (main, Jul 26 2022, 00:00:00) [GCC 12.1.1 20220628 (Red Hat 12.1.1-3)]
python-bits: 64
OS: Linux
OS-release: 5.17.13-300.fc36.x86_64
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: C.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: 1.12.1
libnetcdf: 4.9.0
xarray: 2022.6.0
pandas: 1.3.5
numpy: 1.22.0
scipy: 1.8.1
netCDF4: 1.6.0
pydap: None
h5netcdf: None
h5py: None
Nio: None
zarr: 2.11.3
cftime: 1.6.0
nc_time_axis: None
PseudoNetCDF: None
rasterio: 1.2.10
cfgrib: None
iris: None
bottleneck: None
dask: 2022.7.1
distributed: None
matplotlib: 3.5.2
cartopy: None
seaborn: 0.11.2
numbagg: None
fsspec: 2022.5.0
cupy: None
pint: 0.16.1
sparse: None
flox: None
numpy_groupies: None
setuptools: 62.6.0
pip: 22.2
conda: None
pytest: 7.1.2
IPython: None
sphinx: 5.0.2
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completed | xarray 13221727 | issue | ||||||
936536548 | MDExOlB1bGxSZXF1ZXN0NjgzMjM0MjQ1 | 5574 | Fix type inference for dask push. | QuLogic 302469 | closed | 0 | 2 | 2021-07-04T20:43:23Z | 2021-07-05T20:05:02Z | 2021-07-05T17:24:27Z | CONTRIBUTOR | 0 | pydata/xarray/pulls/5574 |
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xarray 13221727 | pull | |||||
895202415 | MDU6SXNzdWU4OTUyMDI0MTU= | 5342 | test_push_dask fails type inference | QuLogic 302469 | closed | 0 | 7 | 2021-05-19T09:20:24Z | 2021-07-05T17:24:27Z | 2021-07-05T17:24:27Z | CONTRIBUTOR | What happened:
When building the Fedora package of xarray 0.18.0/0.18.1, Minimal Complete Verifiable Example: ```pytb _____ testpush_dask ______ [gw2] linux -- Python 3.9.5 /usr/bin/python3 @requires_dask @requires_bottleneck def test_push_dask(): import bottleneck import dask.array
/builddir/build/BUILDROOT/python-xarray-0.18.1-1.fc35.x86_64/usr/lib/python3.9/site-packages/xarray/core/duck_array_ops.py:663: in push return dask_array_ops.push(array, n, axis) /builddir/build/BUILDROOT/python-xarray-0.18.1-1.fc35.x86_64/usr/lib/python3.9/site-packages/xarray/core/dask_array_ops.py:69: in push pushed = array.map_blocks(push, axis=axis, n=n) /usr/lib/python3.9/site-packages/dask/array/core.py:2333: in map_blocks return map_blocks(func, self, args, *kwargs) /usr/lib/python3.9/site-packages/dask/array/core.py:683: in map_blocks dtype = apply_infer_dtype(func, args, original_kwargs, "map_blocks") func = <built-in function push>, args = [array([1.])]
kwargs = {'axis': 0, 'n': None}, funcname = 'map_blocks'
suggest_dtype = 'dtype', nout = None
def apply_infer_dtype(func, args, kwargs, funcname, suggest_dtype="dtype", nout=None):
"""
Tries to infer output dtype of
Anything else we need to know?: Environment: Output of <tt>xr.show_versions()</tt>``` INSTALLED VERSIONS ------------------ commit: None python: 3.9.5 (default, May 4 2021, 00:00:00) [GCC 11.1.1 20210428 (Red Hat 11.1.1-1)] python-bits: 64 OS: Linux OS-release: 5.11.19-300.fc34.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: C LOCALE: ('en_US', 'UTF-8') libhdf5: 1.10.6 libnetcdf: 4.7.3 xarray: 0.18.1 pandas: 1.2.1 numpy: 1.20.1 scipy: 1.6.2 netCDF4: 1.5.6 pydap: None h5netcdf: None h5py: None Nio: None zarr: 2.8.1 cftime: 1.4.1 nc_time_axis: None PseudoNetCDF: None rasterio: 1.2.1 cfgrib: None iris: None bottleneck: 1.2.1 dask: 2021.04.1 distributed: None matplotlib: 3.4.2 cartopy: None seaborn: None numbagg: None pint: 0.16.1 setuptools: 56.1.0 pip: None conda: None pytest: 6.2.4 IPython: None sphinx: None ``` |
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completed | xarray 13221727 | issue | ||||||
644465420 | MDU6SXNzdWU2NDQ0NjU0MjA= | 4172 | test_aggregation fails on aarch64/ppc64le/s390x | QuLogic 302469 | closed | 0 | 0 | 2020-06-24T09:31:14Z | 2020-06-24T18:24:55Z | 2020-06-24T18:24:55Z | CONTRIBUTOR | What happened:
When building happens on any of the above architectures, the
What you expected to happen: Tests pass, no matter the architecture. Minimal Complete Verifiable Example:
Environment:
All builds are run here; you can look at the individual architectures to see actual failures in |
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completed | xarray 13221727 | issue | ||||||
487746465 | MDExOlB1bGxSZXF1ZXN0MzEyOTQwMzgw | 3274 | Use drawstyle instead of linestyle in plot.step. | QuLogic 302469 | closed | 0 | 13 | 2019-08-31T08:33:54Z | 2020-03-26T00:57:02Z | 2020-03-26T00:47:43Z | CONTRIBUTOR | 0 | pydata/xarray/pulls/3274 | Mixing the two is deprecated in Matplotlib 3.1, and breaks the doc build if warnings are set to errors (which they are in new IPython sphinx extensions.)
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xarray 13221727 | pull | |||||
487745268 | MDExOlB1bGxSZXF1ZXN0MzEyOTM5NzA1 | 3273 | Don't set box-forced in Cartopy example. | QuLogic 302469 | closed | 0 | 1 | 2019-08-31T08:20:12Z | 2019-08-31T09:19:20Z | 2019-08-31T09:18:22Z | CONTRIBUTOR | 0 | pydata/xarray/pulls/3273 | It is deprecated in Matplotlib 2.2, removed in 3.1, and appears to have no effect on the result.
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xarray 13221727 | pull | |||||
480871729 | MDU6SXNzdWU0ODA4NzE3Mjk= | 3219 | box-forced is removed in Matplotlib 3.1 | QuLogic 302469 | closed | 0 | 0 | 2019-08-14T20:24:52Z | 2019-08-31T09:18:22Z | 2019-08-31T09:18:22Z | CONTRIBUTOR | When building against Matplotlib 3.1, the docs fail (see log) because Problem DescriptionDocs fail on Output of
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completed | xarray 13221727 | issue | ||||||
421751511 | MDU6SXNzdWU0MjE3NTE1MTE= | 2815 | Cache datasets in XDG directories | QuLogic 302469 | open | 0 | 2 | 2019-03-16T01:01:52Z | 2019-03-16T01:30:46Z | CONTRIBUTOR | Problem descriptionThe default directory for caching datasets is currently This doesn't follow the XDG standard on Linux, and AFAIK isn't actually invisible on Windows. Expected OutputIt would be better if this followed the XDG standard, i.e., |
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xarray 13221727 | issue | ||||||||
212388758 | MDExOlB1bGxSZXF1ZXN0MTA5NDQ3Mjc1 | 1298 | netcdf4/h5netcdf cross engine test broken on Python 2 | QuLogic 302469 | closed | 0 | 6 | 2017-03-07T10:21:54Z | 2017-04-07T04:21:10Z | 2017-04-07T03:41:17Z | CONTRIBUTOR | 0 | pydata/xarray/pulls/1298 | This is not really a bugfix or enhancement. In fact, it's just a bug report right now. I'm having trouble running tests on Python 2 with both netcdf4 and h5netcdf installed due to the cross engine test (
I noticed that the requirements list
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xarray 13221727 | pull |
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