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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at ▲ | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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1355770800 | I_kwDOAMm_X85Qz2uw | 6969 | Regression on DataArray.unstack on v2022.06.0 : "ValueError: IndexVariable objects must be 1-dimensional" | bboutanquoi 112489422 | closed | 0 | benbovy 4160723 | 1 | 2022-08-30T13:25:16Z | 2022-09-27T10:35:40Z | 2022-09-27T10:35:40Z | NONE | What happened?Please see code below With xarray:2022.06.0, DataArray.unstack raise an ValueError exception ```python-tracebackValueError Traceback (most recent call last) Input In [2], in <cell line: 24>() 21 y = y.assign_coords(day=y.j + y.last_j) 22 y = y.set_index(multi=['sub_id', 'last_j']) ---> 24 y = y.unstack() File /opt/conda/lib/python3.9/site-packages/xarray/core/dataarray.py:2402, in DataArray.unstack(self, dim, fill_value, sparse) 2342 def unstack( 2343 self, 2344 dim: Hashable | Sequence[Hashable] | None = None, 2345 fill_value: Any = dtypes.NA, 2346 sparse: bool = False, 2347 ) -> DataArray: 2348 """ 2349 Unstack existing dimensions corresponding to MultiIndexes into 2350 multiple new dimensions. (...) 2400 DataArray.stack 2401 """ -> 2402 ds = self._to_temp_dataset().unstack(dim, fill_value, sparse) 2403 return self._from_temp_dataset(ds) File /opt/conda/lib/python3.9/site-packages/xarray/core/dataset.py:4656, in Dataset.unstack(self, dim, fill_value, sparse) 4652 result = result._unstack_full_reindex( 4653 dim, stacked_indexes[dim], fill_value, sparse 4654 ) 4655 else: -> 4656 result = result._unstack_once( 4657 dim, stacked_indexes[dim], fill_value, sparse 4658 ) 4659 return result File /opt/conda/lib/python3.9/site-packages/xarray/core/dataset.py:4492, in Dataset.unstack_once(self, dim, index_and_vars, fill_value, sparse) 4489 else: 4490 fill_value = fill_value -> 4492 variables[name] = var.unstack_once( 4493 index=clean_index, 4494 dim=dim, 4495 fill_value=fill_value, 4496 sparse=sparse, 4497 ) 4498 else: 4499 variables[name] = var File /opt/conda/lib/python3.9/site-packages/xarray/core/variable.py:1732, in Variable._unstack_once(self, index, dim, fill_value, sparse) 1727 # Indexer is a list of lists of locations. Each list is the locations 1728 # on the new dimension. This is robust to the data being sparse; in that 1729 # case the destinations will be NaN / zero. 1730 data[(..., *indexer)] = reordered -> 1732 return self._replace(dims=new_dims, data=data) File /opt/conda/lib/python3.9/site-packages/xarray/core/variable.py:985, in Variable._replace(self, dims, data, attrs, encoding) 983 if encoding is _default: 984 encoding = copy.copy(self._encoding) --> 985 return type(self)(dims, data, attrs, encoding, fastpath=True) File /opt/conda/lib/python3.9/site-packages/xarray/core/variable.py:2720, in IndexVariable.init(self, dims, data, attrs, encoding, fastpath) 2718 super().init(dims, data, attrs, encoding, fastpath) 2719 if self.ndim != 1: -> 2720 raise ValueError(f"{type(self).name} objects must be 1-dimensional") 2722 # Unlike in Variable, always eagerly load values into memory 2723 if not isinstance(self._data, PandasIndexingAdapter): ValueError: IndexVariable objects must be 1-dimensional ``` What did you expect to happen?Please see code below With xarray:2022.03.0, code runs well Minimal Complete Verifiable Example```Python import xarray as xr import numpy as np x = np.concatenate((np.repeat(np.nan,4), np.repeat(1,2))).reshape(3, 2).transpose() x = xr.DataArray( x, coords = { 'composite_id': ['s00', 's10'], 'sub_id': ('composite_id', ['0', '1']), 'last_j': ('composite_id', [100, 111]), 'j': [-2,-1,0] }, dims= ['composite_id', 'j'] ) y = x y = y.stack({'multi': ['composite_id', 'j']}) y = y.dropna('multi') y = y.assign_coords(day=y.j + y.last_j) y = y.set_index(multi=['sub_id', 'last_j']) y = y.unstack() ``` MVCE confirmation
Relevant log outputNo response Anything else we need to know?No response EnvironmentNot working environment with xarray 2022.06.0
INSTALLED VERSIONS
------------------
commit: None
python: 3.9.12 | packaged by conda-forge | (main, Mar 24 2022, 23:51:20)
[GCC 10.3.0]
python-bits: 64
OS: Linux
OS-release: 5.10.104-linuxkit
machine: aarch64
processor: aarch64
byteorder: little
LC_ALL: en_US.UTF-8
LANG: en_US.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: None
libnetcdf: None
xarray: 2022.6.0
pandas: 1.4.3
numpy: 1.23.2
scipy: None
netCDF4: None
pydap: None
h5netcdf: None
h5py: None
Nio: None
zarr: None
cftime: None
nc_time_axis: None
PseudoNetCDF: None
rasterio: None
cfgrib: None
iris: None
bottleneck: None
dask: None
distributed: None
matplotlib: None
cartopy: None
seaborn: None
numbagg: None
fsspec: None
cupy: None
pint: None
sparse: None
flox: None
numpy_groupies: None
setuptools: 62.1.0
pip: 22.0.4
conda: 4.12.0
pytest: None
IPython: 8.3.0
sphinx: None
/opt/conda/lib/python3.9/site-packages/_distutils_hack/__init__.py:30: UserWarning: Setuptools is replacing distutils.
warnings.warn("Setuptools is replacing distutils.")
Working environment with xarray 2022.03.0
INSTALLED VERSIONS
------------------
commit: None
python: 3.9.12 | packaged by conda-forge | (main, Mar 24 2022, 23:51:20)
[GCC 10.3.0]
python-bits: 64
OS: Linux
OS-release: 5.10.104-linuxkit
machine: aarch64
processor: aarch64
byteorder: little
LC_ALL: en_US.UTF-8
LANG: en_US.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: None
libnetcdf: None
xarray: 2022.3.0
pandas: 1.4.3
numpy: 1.23.2
scipy: None
netCDF4: None
pydap: None
h5netcdf: None
h5py: None
Nio: None
zarr: None
cftime: None
nc_time_axis: None
PseudoNetCDF: None
rasterio: None
cfgrib: None
iris: None
bottleneck: None
dask: None
distributed: None
matplotlib: None
cartopy: None
seaborn: None
numbagg: None
fsspec: None
cupy: None
pint: None
sparse: None
setuptools: 62.1.0
pip: 22.0.4
conda: 4.12.0
pytest: None
IPython: 8.3.0
sphinx: None
/opt/conda/lib/python3.9/site-packages/_distutils_hack/__init__.py:30: UserWarning: Setuptools is replacing distutils.
warnings.warn("Setuptools is replacing distutils.")
|
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