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id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
219611498 MDU6SXNzdWUyMTk2MTE0OTg= 1353 Cannot import xarray.tests due to use of pytest.config jjhelmus 1050278 closed 0     6 2017-04-05T14:55:31Z 2017-04-06T18:12:18Z 2017-04-06T18:12:18Z CONTRIBUTOR      

xarray.tests cannot be imported due to the use of pytest.config:

$ python -c "import xarray; print(xarray.__version__); import xarray.tests" 0.9.2-3-g9479038 Traceback (most recent call last): File "<string>", line 1, in <module> File "/home/jhelmus/devel/xarray/xarray/tests/__init__.py", line 118, in <module> not pytest.config.getoption("--run-flaky"), AttributeError: module 'pytest' has no attribute 'config'

The use of pytest.config in the xarray/tests/__init__.py seem to have been introduced in #1336. From the discussion in pytest-dev/pytest#1688 it seems as if the use of pytest.config is discouraged.

 
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   completed xarray 13221727 issue
96421438 MDExOlB1bGxSZXF1ZXN0NDA1MDc0ODU= 487 Allow for multiple values in missing_value or _FillValue jjhelmus 1050278 closed 0     4 2015-07-21T21:34:49Z 2015-07-22T21:33:48Z 2015-07-22T21:33:41Z CONTRIBUTOR   0 pydata/xarray/pulls/487

NetCDF files which specify multiple missing_value or _FillValue values will result in a warning being issues and any elements which match any of the missing_value or _FillValue values being decoded as NaN.

closes #471

 
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     xarray 13221727 pull
94966000 MDU6SXNzdWU5NDk2NjAwMA== 471 Read NetCDF files with multiple values in missing_value attribute jjhelmus 1050278 closed 0     5 2015-07-14T14:58:56Z 2015-07-22T21:33:41Z 2015-07-22T21:33:41Z CONTRIBUTOR      

For certain data, for example NEXRAD Level 2 data, the NetCDF Java library will set the missing_value attribute for multiple variables in the produced NetCDF to a vector containing multiple variables. Currently loading these files in xray raises a ValueError in the decode_cf_variable function.

Netcdf4-python returns a NumPy masked array with all values in the missing_value vector to np.ma.masked, xray may want to copy this model by replacing these elements with NaN. Another option is to raise an more appropriate error indicating that these files are not supported as vector missing_value attributes do not seem to meet a strict reading of section 2.5.1 of the CF conventions.

I can provide an example file if desired.

 
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   completed xarray 13221727 issue

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