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  • xarray 7
id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
415209776 MDU6SXNzdWU0MTUyMDk3NzY= 2791 formatting of singleton DataArrays yohai 6164157 closed 0     8 2019-02-27T16:22:34Z 2023-12-02T02:44:06Z 2023-12-02T02:44:05Z CONTRIBUTOR      

Code Sample, a copy-pastable example if possible

python a=xr.DataArray(1.234) '{:1.3f}'.format(a) # throws error '{:1.3f}'.format(a.values) # behaves nicely

Problem description

I think it would be useful for repr(a) to return repr(a.values) when a.ndim==0 and perhaps also when a.size==1. For example, this would make such code work: python a=xr.DataArray(range(4)) ' '.join('{:d}'.format(v) for v in a) while currently one has to write python ' '.join('{:d}'.format(v.values) for v in a) I tried to think whether this will break something else but I couldn't think of anything.

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  completed xarray 13221727 issue
633516123 MDU6SXNzdWU2MzM1MTYxMjM= 4126 Bug in legend of dataset.plot.scatter yohai 6164157 closed 0     3 2020-06-07T15:38:46Z 2020-09-13T08:33:15Z 2020-09-10T18:48:11Z CONTRIBUTOR      

When using Dataset.scatter with hue being a variable of dtype string, the legend turns out to be wrong.

MCVE Code Sample

python import xarray as xr import numpy as np dd = xr.Dataset({'y': (['x'], np.arange(8)), 'label': (['x'], list('AABBCCDD'))}, coords={'x': np.linspace(0,1,8)}) dd.plot.scatter(x='x', y='y', hue='label') Output is (note the legend):

Playing around it seems that it always chooses the first 4 values as the legend labels (note that the order of colors of the points is correct): python import xarray as xr import numpy as np dd = xr.Dataset({'y': (['x'], np.arange(8)), 'label': (['x'], list('ABBACDDC'))}, coords={'x': np.linspace(0,1,8)}) dd.plot.scatter(x='x', y='y', hue='label')

And if there are only 3 labels in total it chooses the first 3: python import xarray as xr import numpy as np dd = xr.Dataset({'y': (['x'], np.arange(6)), 'label': (['x'], list('ABBACC'))}, coords={'x': np.linspace(0,1,6)}) dd.plot.scatter(x='x', y='y', hue='label')

Expected Output

Legend in first two plots should read 'ABCD' and last plot 'ABC'

Versions

Output of <tt>xr.show_versions()</tt> INSTALLED VERSIONS ------------------ commit: None libhdf5: 1.10.4 libnetcdf: None xarray: 0.15.1 pandas: 0.25.1 numpy: 1.17.2 scipy: 1.3.1 netCDF4: None pydap: None h5netcdf: None h5py: 2.9.0 Nio: None zarr: None cftime: None nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: 1.2.1 dask: 2.5.2 distributed: 2.5.2 matplotlib: 3.1.1 cartopy: None seaborn: 0.9.0 numbagg: None setuptools: 41.4.0 pip: 19.2.3 conda: 4.8.1 pytest: 5.2.1 IPython: 7.8.0 sphinx: 2.2.0
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  completed xarray 13221727 issue
407085814 MDU6SXNzdWU0MDcwODU4MTQ= 2748 Inconsistent name behavior in masking yohai 6164157 closed 0     2 2019-02-06T05:25:47Z 2019-02-11T19:05:40Z 2019-02-11T19:05:40Z CONTRIBUTOR      

Code Sample, a copy-pastable example if possible

Consider the following 4 ways to mask an DataArray:

```python import xarray as xr

ds=xr.Dataset({'a': (['x'], range(10))}, coords={'x': range(10)}) ds['msk']=ds.a>5 msk=ds.a>5

v1=ds.a.where(ds.a>5) v2=ds.a.where(msk) v3=ds.where(ds.msk).a v4=ds.a.where(ds.msk)

', '.join(str(v.name) for v in (v1, v2, v3, v4))#output: 'a, a, a, None'

Problem description

All vs defined above are identical, except that v4 has lost its name in masking. This can cause errors in merging (like just happened to me and was hard and annoying to catch).

Is this behavior intentional? It seems inconsistent to me that ds.a.where(ds.msk) is not equivalent to ds.where(ds.msk).a

Expected Output

I would expect ds.a.where(ds.msk) to return a DataArray with the name a.

Output of xr.show_versions()

INSTALLED VERSIONS ------------------ commit: None python: 3.7.2 (default, Dec 29 2018, 00:00:04) [Clang 4.0.1 (tags/RELEASE_401/final)] python-bits: 64 OS: Darwin OS-release: 18.2.0 machine: x86_64 processor: i386 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: en_US.UTF-8 libhdf5: None libnetcdf: None xarray: 0.11.1+49.g27cf53f2 pandas: 0.23.3 numpy: 1.16.0 scipy: 1.2.0 netCDF4: None pydap: None h5netcdf: None h5py: None Nio: None zarr: 2.2.0 cftime: 1.0.3.4 PseudonetCDF: None rasterio: None cfgrib: None iris: None bottleneck: 1.2.1 cyordereddict: None dask: 1.1.0 distributed: 1.25.3 matplotlib: 3.0.2 cartopy: 0.17.0 seaborn: 0.9.0 setuptools: 40.8.0 pip: 19.0.1 conda: None pytest: None IPython: 7.2.0 sphinx: 1.8.2
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  completed xarray 13221727 issue
406615454 MDU6SXNzdWU0MDY2MTU0NTQ= 2743 Documentation fails to build yohai 6164157 closed 0     5 2019-02-05T03:27:14Z 2019-02-06T16:56:48Z 2019-02-06T16:56:48Z CONTRIBUTOR      

I'm trying to build the doc and it fails. I have a fresh miniconda install with a test environment created as instructed in the docs (i.e. conda env create -f ci/requirements-py36.yml followed by conda install -c conda-forge sphinx sphinx_rtd_theme sphinx-gallery numpydoc).

Code Sample, a copy-pastable example if possible

shell make clean make html

Problem description

It generates the following error:

Exception occurred: File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/IPython/sphinxext/ipython_directive.py", line 567, in process_input raise RuntimeError('Non Expected exception in `{}` line {}'.format(filename, lineno)) RuntimeError: Non Expected exception in `/Users/yohai/Dropbox/Coding/xarray/doc/io.rst` line 376 The full traceback has been saved in /var/folders/mj/g9tnmysj6zld_3dg6hm9tkk00000gn/T/sphinx-err-8q55qmxi.log, if you want to report the issue to the developers. Please also report this if it was a user error, so that a better error message can be provided next time. A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks! make: *** [html] Error 2

The problem seems to be in doc/io.rst. When I delete all lines upto line 367 it builds well The content of the traceback logfile:

``` # Sphinx version: 1.8.4 # Python version: 3.6.7 (CPython) # Docutils version: 0.14 # Jinja2 version: 2.10 # Last messages: # reading sources... [ 97%] indexing # # reading sources... [ 97%] installing # # reading sources... [ 97%] internals # # reading sources... [ 97%] interpolation # # reading sources... [ 98%] io # # Loaded extensions: # sphinx.ext.mathjax (1.8.4) from /Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/ext/mathjax.py # alabaster (0.7.12) from /Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/alabaster/__init__.py # sphinx.ext.autodoc (1.8.4) from /Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/ext/autodoc/__init__.py # sphinx.ext.autosummary (1.8.4) from /Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/ext/autosummary/__init__.py # sphinx.ext.intersphinx (1.8.4) from /Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/ext/intersphinx.py # sphinx.ext.extlinks (1.8.4) from /Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/ext/extlinks.py # numpydoc (0.8.0) from /Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/numpydoc/__init__.py # IPython.sphinxext.ipython_directive (unknown version) from /Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/IPython/sphinxext/ipython_directive.py # IPython.sphinxext.ipython_console_highlighting (unknown version) from /Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/IPython/sphinxext/ipython_console_highlighting.py # sphinx_gallery.gen_gallery (0.2.0) from /Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx_gallery/gen_gallery.py Traceback (most recent call last): File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/cmd/build.py", line 304, in build_main app.build(args.force_all, filenames) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/application.py", line 341, in build self.builder.build_update() File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/builders/__init__.py", line 347, in build_update len(to_build)) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/builders/__init__.py", line 360, in build updated_docnames = set(self.read()) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/builders/__init__.py", line 468, in read self._read_serial(docnames) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/builders/__init__.py", line 490, in _read_serial self.read_doc(docname) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/builders/__init__.py", line 534, in read_doc doctree = read_doc(self.app, self.env, self.env.doc2path(docname)) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/io.py", line 318, in read_doc pub.publish() File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/core.py", line 217, in publish self.settings) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/readers/__init__.py", line 72, in read self.parse() File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/readers/__init__.py", line 78, in parse self.parser.parse(self.input, document) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/sphinx/parsers.py", line 88, in parse self.statemachine.run(inputstring, document, inliner=self.inliner) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 171, in run input_source=document['source']) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/statemachine.py", line 239, in run context, state, transitions) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/statemachine.py", line 460, in check_line return method(match, context, next_state) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2753, in underline self.section(title, source, style, lineno - 1, messages) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 327, in section self.new_subsection(title, lineno, messages) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 395, in new_subsection node=section_node, match_titles=True) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 282, in nested_parse node=node, match_titles=match_titles) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 196, in run results = StateMachineWS.run(self, input_lines, input_offset) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/statemachine.py", line 239, in run context, state, transitions) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/statemachine.py", line 460, in check_line return method(match, context, next_state) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2753, in underline self.section(title, source, style, lineno - 1, messages) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 327, in section self.new_subsection(title, lineno, messages) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 395, in new_subsection node=section_node, match_titles=True) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 282, in nested_parse node=node, match_titles=match_titles) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 196, in run results = StateMachineWS.run(self, input_lines, input_offset) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/statemachine.py", line 239, in run context, state, transitions) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/statemachine.py", line 460, in check_line return method(match, context, next_state) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2326, in explicit_markup nodelist, blank_finish = self.explicit_construct(match) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2338, in explicit_construct return method(self, expmatch) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2081, in directive directive_class, match, type_name, option_presets) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2130, in run_directive result = directive_instance.run() File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/IPython/sphinxext/ipython_directive.py", line 1005, in run rows, figure = self.shell.process_block(block) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/IPython/sphinxext/ipython_directive.py", line 711, in process_block self.process_input(data, input_prompt, lineno) File "/Users/yohai/miniconda3/envs/test_env/lib/python3.6/site-packages/IPython/sphinxext/ipython_directive.py", line 567, in process_input raise RuntimeError('Non Expected exception in `{}` line {}'.format(filename, lineno)) RuntimeError: Non Expected exception in `/Users/yohai/Dropbox/Coding/xarray/doc/io.rst` line 376 ```

Output of xr.show_versions()

xr.show_versions() INSTALLED VERSIONS ------------------ commit: None python: 3.6.7 | packaged by conda-forge | (default, Nov 20 2018, 18:37:09) [GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] python-bits: 64 OS: Darwin OS-release: 18.2.0 machine: x86_64 processor: i386 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: en_US.UTF-8 libhdf5: 1.10.4 libnetcdf: 4.6.2 xarray: 0.11.1+49.g27cf53f2 pandas: 0.24.1 numpy: 1.15.4 scipy: 1.2.0 netCDF4: 1.4.2 pydap: installed h5netcdf: 0.6.2 h5py: 2.9.0 Nio: None zarr: 2.2.0 cftime: 1.0.3.4 PseudonetCDF: None rasterio: 1.0.15 cfgrib: 0.9.5.5 iris: None bottleneck: 1.2.1 cyordereddict: None dask: 1.1.1 distributed: 1.25.3 matplotlib: 3.0.2 cartopy: 0.17.0 seaborn: 0.9.0 setuptools: 40.7.1 pip: 19.0.1 conda: None pytest: 4.2.0 IPython: 7.2.0 sphinx: 1.8.4
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  completed xarray 13221727 issue
342005194 MDU6SXNzdWUzNDIwMDUxOTQ= 2295 Broken link in doc yohai 6164157 closed 0     1 2018-07-17T17:02:18Z 2018-07-17T20:01:28Z 2018-07-17T20:01:28Z CONTRIBUTOR      

The link to the external blogpost about xarray and dask, that was fixed in https://github.com/pydata/xarray/pull/1573, is broken again. Is it available somewhere?

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  completed xarray 13221727 issue
335123398 MDU6SXNzdWUzMzUxMjMzOTg= 2248 unnamed args in faceted line plots yohai 6164157 closed 0     0 2018-06-23T19:02:17Z 2018-07-04T17:06:55Z 2018-07-04T17:06:54Z CONTRIBUTOR      

Code Sample, a copy-pastable example if possible

Unnamed arguments that are passed to line plots are directly passed to plot. ```python import xarray as xr import numpy as np

d3 = xr.DataArray(np.random.randn(10, 6, 3), dims=['x', 'y', 'z'], coords=[range(10), range(6), ['foo', 'bar', 'foobar']]) d2 = d3[..., 0].squeeze(drop=True)

This will make triangle markers and dashed lines:

d2.plot.line('^--',x='x') We [recently implemented ](https://github.com/pydata/xarray/pull/2107) faceted line plots:python d3.plot(col='z', hue='x') #should work from commit bc52f8a onwards. ```

However, current implementation does not allow for passing of unnamed arguments: python d3.plot('^--', col='z', hue='x') #gives error d3.plot.line('^--', col='z', hue='x') #gives different error I'd be happy to fix this (it's probably an easy fix, I didn't check) but I'm not sure what the correct user interface should be. Should DataArray.plot with hue as a keyword behave identically to DataArray.plot.line?

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  completed xarray 13221727 issue
317853953 MDU6SXNzdWUzMTc4NTM5NTM= 2084 New Feature: Add FacetGrid functionality to plot.line() yohai 6164157 closed 0     5 2018-04-26T02:18:41Z 2018-06-15T05:13:40Z 2018-06-15T05:13:40Z CONTRIBUTOR      

When data is more than 2 dimensional, plot() creates a FacetGrid where each facet gets plots two dimensional data. I would find it very useful to have similar functionality for line plots.

Let's define three DataArrays, of 2,3 and 4 dimensions, named d2, d3 and d4.

```python d4=xr.DataArray(np.random.randn(3,4,5,6), dims=['x','y','z','w'], coords=[range(3),range(4),range(5),range(6)]) d3=d4[...,0].drop('w') d2=d3[...,0].drop('z')

d4.plot(row='x', col='y') #creates a 2d facet grid, each facet is a pcolormesh d3.plot(col='x') #creates a 1d facet grid, each facet is a pcolormesh plt.show() ```

It would be very useful to have a similar interface for line plots too. That is, I would expect python d2.plot.line(row='y', x='x') to create a row of panels, each having one line. Similarly, I would expect ```python d3.plot.line(col='y', x='x')

or alternatively

d3.plot.line(col='y', hue='z') to create a row of panels, each having a series of lines, with `hue` corresponding to `z` and so forth. Finally,python d4.plot.line(row='z',col='y', x='x')

or alternatively

d4.plot.line(row='z',col='y', hue='w') `` should create a 2d matrix of panels, each having a series of lines, withhuecorresponding tow`.

This seems to me like a natural generalization of the behaviour of plot(), and I found myself coding manually loops to do that a few times.

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  completed xarray 13221727 issue

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