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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at ▲ | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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677296128 | MDU6SXNzdWU2NzcyOTYxMjg= | 4336 | cftime_range fails for base cftime.datetime object | aidanheerdegen 6063709 | open | 0 | 8 | 2020-08-12T00:56:18Z | 2023-11-26T22:40:03Z | CONTRIBUTOR | What happened:
What you expected to happen: I expected Minimal Complete Verifiable Example:
Anything else we need to know?: Returns this error: ```python TypeError Traceback (most recent call last) <ipython-input-29-d090ea15e436> in <module> 2 import xarray 3 date = cftime.datetime(10,1,1) ----> 4 xarray.cftime_range(date, periods=3, freq='Y') /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.07/lib/python3.7/site-packages/xarray/coding/cftime_offsets.py in cftime_range(start, end, periods, freq, normalize, name, closed, calendar) 973 else: 974 offset = to_offset(freq) --> 975 dates = np.array(list(_generate_range(start, end, periods, offset))) 976 977 left_closed = False /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.07/lib/python3.7/site-packages/xarray/coding/cftime_offsets.py in _generate_range(start, end, periods, offset) 744 """ 745 if start: --> 746 start = offset.rollforward(start) 747 748 if end: /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.07/lib/python3.7/site-packages/xarray/coding/cftime_offsets.py in rollforward(self, date) 526 def rollforward(self, date): 527 """Roll date forward to nearest end of year""" --> 528 if self.onOffset(date): 529 return date 530 else: /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.07/lib/python3.7/site-packages/xarray/coding/cftime_offsets.py in onOffset(self, date) 522 """Check if the given date is in the set of possible dates created 523 using a length-one version of this offset class.""" --> 524 return date.day == _days_in_month(date) and date.month == self.month 525 526 def rollforward(self, date): /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.07/lib/python3.7/site-packages/xarray/coding/cftime_offsets.py in _days_in_month(date) 195 else: 196 reference = type(date)(date.year, date.month + 1, 1) --> 197 return (reference - timedelta(days=1)).day 198 199 TypeError: unsupported operand type(s) for -: 'cftime._cftime.datetime' and 'datetime.timedelta'
The error occurs here https://github.com/pydata/xarray/blob/master/xarray/coding/cftime_offsets.py#L197 because this operation is not defined for the base class https://github.com/Unidata/cftime/blob/master/cftime/_cftime.pyx#L1054 The relevant tests all seem to use datetime strings which are by default https://github.com/pydata/xarray/blob/master/xarray/coding/cftime_offsets.py#L788 Environment: Output of <tt>xr.show_versions()</tt>INSTALLED VERSIONS ------------------ commit: None python: 3.7.8 | packaged by conda-forge | (default, Jul 31 2020, 02:25:08) [GCC 7.5.0] python-bits: 64 OS: Linux OS-release: 2.6.32-754.18.2.el6.x86_64 machine: x86_64 processor: x86_64 byteorder: little LC_ALL: en_AU.utf8 LANG: en_AU.UTF-8 LOCALE: en_AU.UTF-8 libhdf5: 1.10.5 libnetcdf: 4.7.4 xarray: 0.16.0 pandas: 1.1.0 numpy: 1.19.1 scipy: 1.5.2 netCDF4: 1.5.3 pydap: installed h5netcdf: 0.8.1 h5py: 2.10.0 Nio: 1.5.5 zarr: 2.4.0 cftime: 1.0.3.4 nc_time_axis: 1.2.0 PseudoNetCDF: None rasterio: 1.1.5 cfgrib: 0.9.8.4 iris: 2.4.0 bottleneck: 1.3.2 dask: 2.22.0 distributed: 2.22.0 matplotlib: 3.3.0 cartopy: 0.18.0 seaborn: 0.10.1 numbagg: None pint: 0.14 setuptools: 49.2.0.post20200712 pip: 20.1.1 conda: installed pytest: 6.0.1 IPython: 7.17.0 sphinx: 3.2.0 |
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xarray 13221727 | issue | ||||||||
553930127 | MDU6SXNzdWU1NTM5MzAxMjc= | 3717 | reduce on groupby auto-adds axis argument and complains when axis argument is specified | aidanheerdegen 6063709 | open | 0 | 3 | 2020-01-23T04:29:58Z | 2022-04-06T15:38:59Z | CONTRIBUTOR | The behaviour of MCVE Code SampleI have repurposed someone else's nice code sample for this, thanks! ```python import pandas as pd import xarray as xr import numpy as np s_date = '1990-01-01' e_date = '2019-05-01' days = pd.date_range(start=s_date, end=e_date, freq='B', name='time') items = pd.Index([str(i) for i in range(300)], name = 'item') dat = xr.DataArray(np.random.rand(len(days), len(items)), coords=[days, items]) print(dat) def simplesum(array, axis): print(axis) return np.sum(array, axis) dat.groupby('time.month').reduce(simplesum) dat.groupby('time.month').reduce(simplesum, axis=0) ``` The The second ValueError Traceback (most recent call last) <ipython-input-42-381dec6862e6> in <module> ----> 1 dat.groupby('time.month').reduce(simplesum, axis=0) /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.01/lib/python3.7/site-packages/xarray/core/groupby.py in reduce(self, func, dim, axis, keep_attrs, shortcut, **kwargs) 836 check_reduce_dims(dim, self.dims) 837 --> 838 return self.map(reduce_array, shortcut=shortcut) 839 840 /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.01/lib/python3.7/site-packages/xarray/core/groupby.py in map(self, func, shortcut, args, kwargs) 755 grouped = self._iter_grouped() 756 applied = (maybe_wrap_array(arr, func(arr, *args, kwargs)) for arr in grouped) --> 757 return self._combine(applied, shortcut=shortcut) 758 759 def apply(self, func, shortcut=False, args=(), **kwargs): /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.01/lib/python3.7/site-packages/xarray/core/groupby.py in _combine(self, applied, restore_coord_dims, shortcut) 774 def _combine(self, applied, restore_coord_dims=False, shortcut=False): 775 """Recombine the applied objects like the original.""" --> 776 applied_example, applied = peek_at(applied) 777 coord, dim, positions = self._infer_concat_args(applied_example) 778 if shortcut: /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.01/lib/python3.7/site-packages/xarray/core/utils.py in peek_at(iterable) 180 """ 181 gen = iter(iterable) --> 182 peek = next(gen) 183 return peek, itertools.chain([peek], gen) 184 /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.01/lib/python3.7/site-packages/xarray/core/groupby.py in <genexpr>(.0) 754 else: 755 grouped = self._iter_grouped() --> 756 applied = (maybe_wrap_array(arr, func(arr, args, *kwargs)) for arr in grouped) 757 return self._combine(applied, shortcut=shortcut) 758 /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.01/lib/python3.7/site-packages/xarray/core/groupby.py in reduce_array(ar) 832 833 def reduce_array(ar): --> 834 return ar.reduce(func, dim, axis, keep_attrs=keep_attrs, **kwargs) 835 836 check_reduce_dims(dim, self.dims) /g/data3/hh5/public/apps/miniconda3/envs/analysis3-20.01/lib/python3.7/site-packages/xarray/core/variable.py in reduce(self, func, dim, axis, keep_attrs, keepdims, allow_lazy, **kwargs) 1511 dim = None 1512 if dim is not None and axis is not None: -> 1513 raise ValueError("cannot supply both 'axis' and 'dim' arguments") 1514 1515 if dim is not None: ValueError: cannot supply both 'axis' and 'dim' arguments ``` Expected OutputI would expect the output of both The second Problem DescriptionIt is impossible to specify a Output of
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xarray 13221727 | issue |
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