What happened?

I wanted to rename a dimension coordinate for two datasets before merging: ds = ds.rename_vars(y="z").swap_dims(y="z"), and the same for the second data set. After merging the datasets, the merged result has the dimension "y" in addition to "z".

Swapping the order of rename_vars and swap_dims before merging works in that "y" does not reappear, but then "z" is listed as a non-dimension coordinate.

Doing rename_vars followed by swap_dims /after/ merging gives the result I wanted, but if I merge again, the same issue occurs.

My current solution is to only rename dimension coordinates before saving to netCDF.

What did you expect to happen?

Merging two datasets with the same coordinates and dimensions (but different data variables) should result in a single dataset with all of the data variables from the two datasets and exactly the same coordinates and dimensions.

Minimal Complete Verifiable Example

```Python import numpy as np import xarray as xr from xarray.core.utils import Frozen

A = np.arange(4).reshape((2, 2)) B = np.arange(4).reshape((2, 2)) + 4 ds1 = xr.Dataset({"A": (["x", "y"], A), "B": (["x", "y"], B)}, coords={"x": ("x", [1, 2]), "y": ("y", [1, 2])}) ds2 = xr.Dataset({"C": (["x", "y"], A), "D": (["x", "y"], B)}, coords={"x": ("x", [1, 2]), "y": ("y", [1, 2])})

assert ds1.dims == Frozen({"x": 2, "y": 2}) assert ds2.dims == Frozen({"x": 2, "y": 2})

ds1_swap = ds1.rename_vars(y="z").swap_dims(y="z") ds2_swap = ds2.rename_vars(y="z").swap_dims(y="z")

assert ds1_swap.dims == Frozen({"x": 2, "z": 2}) assert ds2_swap.dims == Frozen({"x": 2, "z": 2})

merging makes the dimension "y" reappear (I would expect this assertion to fail):

assert xr.merge([ds1_swap, ds2_swap]).dims == Frozen({"x": 2, "z": 2, "y": 2})

renaming and swapping after the merge causes issues later:

ds12 = xr.merge([ds1, ds2]).rename_vars(y="z").swap_dims(y="z") ds3 = xr.Dataset({"E": (["x", "z"], A), "F": (["x", "z"], B)}, coords={"x": ("x", [1, 2]), "z": ("z", [1, 2])})

ds12 and ds3 have the same dimensions:

assert ds12.dims == Frozen({"x": 2, "z": 2}) assert ds3.dims == Frozen({"x": 2, "z": 2})

but merging brings back "y"

ds123 = xr.merge([ds12, ds3]) assert ds123.dims == Frozen({"x": 2, "z": 2, "y": 2})

as do other operations:

ds12_as = ds12.assign_coords(x=(ds12.x + 1)) assert ds12_as.sizes == Frozen({"x": 2, "z": 2, "y": 2}) ```

MVCE confirmation

• [X] Minimal example — the example is as focused as reasonably possible to demonstrate the underlying issue in xarray.
• [X] Complete example — the example is self-contained, including all data and the text of any traceback.
• [X] Verifiable example — the example copy & pastes into an IPython prompt or Binder notebook, returning the result.
• [X] New issue — a search of GitHub Issues suggests this is not a duplicate.
• [x] Recent environment — the issue occurs with the latest version of xarray and its dependencies.

Relevant log output

No response

Anything else we need to know?

No response

Environment

The MVCE works in all venvs I've tried including: