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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at ▲ | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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1880544087 | I_kwDOAMm_X85wFtNX | 8144 | Add support for netcdf4 enum | bzah 16700639 | closed | 0 | 10 | 2023-09-04T15:51:45Z | 2024-01-17T07:19:33Z | 2024-01-17T07:19:33Z | CONTRIBUTOR | Is your feature request related to a problem?When a netcdf file contains netcdf4 enums , xarray ignores the underlying enum type. The association between the values of the variable and their actual meaning is then lost. MRE: ```py import netCDF4 as nc import xarray as xr -- Create dataset with an enum using the netcdf4 libds = nc.Dataset("mre.nc", "w", format="NETCDF4") {'cloud_type': <class 'netCDF4._netCDF4.EnumType'>: name = 'cloud_type', numpy dtype = int64, fields/values ={'clear': 0, 'cloudy': 1}}ds.createVariable("cloud", cloud_type_enum) ds["cloud"][0] = 1 ds.close() -- Open dataset with xarrayxr_ds = xr.open_dataset("./mre.nc") print(xr_ds.cloud) <xarray.DataArray 'cloud' ()> \n [1 values with dtype=int64]--> We get no metadata about the cloud_type enum that we created abovexr.ds.to_netcdf("mre_xr.nc") -- Open xarray outputted dataset with netCDF4 libprint(nc.Dataset("mre_xr.nc", "r", format="NETCDF4").enumtypes()) {}--> Empty dictionary: the enum we created is lost``` If you know CF, enums could replace replace Describe the solution you'd likeAs far as I understand, to describe the enum we only need a dictionary that map numbers (enum key) to string (enum value) and a way to reference this dictionary in variables that are "typed" to this enum. Bear in mind that the dtype of the variable would still be a number, the enum type would be a secondary metadata. Describe alternatives you've consideredMost people that produce data could get away with using flag_meanings and flag_values to describe their data in a way which is both CF proof and properly managed by xarray. For me, the only workaround at the moment is to use the netCDF4 library directly. Additional context```py nc.version 1.6.2xr.version 2023.2.0``` |
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