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  • xarray · 2 ✖
id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
146079798 MDExOlB1bGxSZXF1ZXN0NjUzNTYxNjE= 817 modified: xarray/backends/api.py swnesbitt 3288592 closed 0     14 2016-04-05T18:59:13Z 2023-01-31T22:51:57Z 2023-01-31T22:51:57Z NONE   0 pydata/xarray/pulls/817

This pull request addresses issue #816, allowing the user to open remote openDAP files that are gzipped using the netCDF4 openDAP-enabled backend. Thanks to @dopplershift and @shoyer for the quick guidance!

 
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     xarray 13221727 pull
145807529 MDU6SXNzdWUxNDU4MDc1Mjk= 816 opendap and gzipped files swnesbitt 3288592 closed 0     4 2016-04-04T21:17:24Z 2019-02-27T19:48:20Z 2019-02-27T19:48:20Z NONE      

Found an issue with opening opendap files that are remotely gzipped - appears that the scipy netCDF backend is used to read gzipped netCDF, but that backend can't do openDAP apparently? Works with local files.

``` ipython print(ncfiles[0]) ascat=xr.open_dataset(ncfiles[0])

http://opendap.jpl.nasa.gov/opendap/OceanWinds/ascat/preview/L2/metop_a/12km/2013/027/ascat_20130127_004801_metopa_32553_eps_o_125_2101_ovw.l2.nc.gz

IOError Traceback (most recent call last) <ipython-input-35-c5425b003df3> in <module>() 1 print(ncfiles[0]) ----> 2 ascat=xr.open_dataset(ncfiles[0])

/data/keeling/a/snesbitt/anaconda2/lib/python2.7/site-packages/xarray/backends/api.pyc in open_dataset(filename_or_obj, group, decode_cf, mask_and_scale, decode_times, concat_characters, decode_coords, engine, chunks, lock, drop_variables) 197 'supported on Python 2.6') 198 try: --> 199 store = backends.ScipyDataStore(gzip.open(filename_or_obj)) 200 except TypeError as e: 201 # TODO: gzipped loading only works with NetCDF3 files.

/data/keeling/a/snesbitt/anaconda2/lib/python2.7/gzip.pyc in open(filename, mode, compresslevel) 32 33 """ ---> 34 return GzipFile(filename, mode, compresslevel) 35 36 class GzipFile(io.BufferedIOBase):

/data/keeling/a/snesbitt/anaconda2/lib/python2.7/gzip.pyc in init(self, filename, mode, compresslevel, fileobj, mtime) 92 mode += 'b' 93 if fileobj is None: ---> 94 fileobj = self.myfileobj = builtin.open(filename, mode or 'rb') 95 if filename is None: 96 # Issue #13781: os.fdopen() creates a fileobj with a bogus name

IOError: [Errno 2] No such file or directory: 'http://opendap.jpl.nasa.gov/opendap/OceanWinds/ascat/preview/L2/metop_a/12km/2013/027/ascat_20130127_004801_metopa_32553_eps_o_125_2101_ovw.l2.nc.gz' ```

 
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   completed xarray 13221727 issue

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