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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at ▲ | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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2267803218 | PR_kwDOAMm_X85t8pSN | 8980 | Complete deprecation of Dataset.dims returning dict | TomNicholas 35968931 | open | 0 | 6 | 2024-04-28T20:32:29Z | 2024-05-01T15:40:44Z | MEMBER | 0 | pydata/xarray/pulls/8980 |
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2120030667 | PR_kwDOAMm_X85mGm4g | 8712 | Only use CopyOnWriteArray wrapper on BackendArrays | TomNicholas 35968931 | open | 0 | 6 | 2024-02-06T06:05:53Z | 2024-02-07T17:09:56Z | MEMBER | 0 | pydata/xarray/pulls/8712 | This makes sure we only use the Motivated by https://github.com/pydata/xarray/issues/8699, which is a counterexample to that assumption.
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1974681146 | PR_kwDOAMm_X85edMm- | 8404 | Hypothesis strategy for generating Variable objects | TomNicholas 35968931 | closed | 0 | 6 | 2023-11-02T17:04:03Z | 2023-12-05T22:45:57Z | 2023-12-05T22:45:57Z | MEMBER | 0 | pydata/xarray/pulls/8404 | Breaks out just the part of #6908 needed for generating arbitrary EDIT: Check out this test which performs a mean on any subset of any Variable object! ```python In [36]: from xarray.testing.strategies import variables In [37]: variables().example() <xarray.Variable (ĭ: 3)> array([-2.22507386e-313-6.62447795e+016j, nan-6.46207519e+185j, -2.22507386e-309+3.33333333e-001j]) ``` @andersy005 @maxrjones @jhamman I thought this might be useful for the @keewis and @Zac-HD sorry for letting that PR languish for literally a year :sweat_smile: This PR addresses your feedback about accepting a callable that returns a strategy generating arrays. That suggestion makes some things a bit more complex in user code but actually allows me to simplify the internals of the
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1200309334 | PR_kwDOAMm_X842BOIk | 6471 | Support **kwargs form in `.chunk()` | TomNicholas 35968931 | closed | 0 | 6 | 2022-04-11T17:37:38Z | 2022-04-12T03:34:49Z | 2022-04-11T19:36:40Z | MEMBER | 0 | pydata/xarray/pulls/6471 | Also adds some explicit tests (and type hinting) for
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1020282789 | I_kwDOAMm_X8480Eel | 5843 | Why are `da.chunks` and `ds.chunks` properties inconsistent? | TomNicholas 35968931 | closed | 0 | 6 | 2021-10-07T17:21:01Z | 2021-10-29T18:12:22Z | 2021-10-29T18:12:22Z | MEMBER | Basically the title, but what I'm referring to is this: ```python In [2]: da = xr.DataArray([[0, 1], [2, 3]], name='foo').chunk(1) In [3]: ds = da.to_dataset() In [4]: da.chunks Out[4]: ((1, 1), (1, 1)) In [5]: ds.chunks Out[5]: Frozen({'dim_0': (1, 1), 'dim_1': (1, 1)}) ``` Why does This seems a bit silly, for a few reasons: 1) it means that some perfectly reasonable code might fail unnecessarily if passed a DataArray instead of a Dataset or vice versa, such as
2) it breaks the pattern we use for
3) if you want the chunks as a tuple they are always accessible via 4) It's an undocumented difference, as the docstrings for
In our codebase this difference is mostly washed out by us using
I'm not sure whether making this consistent is worth the effort of a significant breaking change though :confused: (Sort of related to https://github.com/pydata/xarray/issues/2103) |
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1033884661 | PR_kwDOAMm_X84tkKtA | 5886 | Use .to_numpy() for quantified facetgrids | TomNicholas 35968931 | closed | 0 | 6 | 2021-10-22T19:25:24Z | 2021-10-28T22:42:43Z | 2021-10-28T22:41:59Z | MEMBER | 0 | pydata/xarray/pulls/5886 | Follows on from https://github.com/pydata/xarray/pull/5561 by replacing I noticed the need for this when trying out this example (but trying it without the (@Illviljan in theory
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935317034 | MDExOlB1bGxSZXF1ZXN0NjgyMjU1NDE5 | 5561 | Plots get labels from pint arrays | TomNicholas 35968931 | closed | 0 | 6 | 2021-07-02T00:44:28Z | 2021-07-21T23:06:21Z | 2021-07-21T22:38:34Z | MEMBER | 0 | pydata/xarray/pulls/5561 | Stops you needing to call Builds on top of #5568, so that should be merged first.
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367763373 | MDU6SXNzdWUzNjc3NjMzNzM= | 2473 | Recommended way to extend xarray Datasets using accessors? | TomNicholas 35968931 | closed | 0 | 6 | 2018-10-08T12:19:21Z | 2018-10-31T09:58:05Z | 2018-10-31T09:58:05Z | MEMBER | Hi, I'm now regularly using xarray (& dask) for organising and analysing the output of the simulation code I use (BOUT++) and it's very helpful, thank you!. However my current approach is quite clunky at dealing the extra information and functionality that's specific to the simulation code I'm using, and I have questions about what the recommended way to extend the xarray Dataset class is. This seems like a general enough problem that I thought I would make an issue for it. DesiredWhat I ideally want to do is extend the xarray.Dataset class to accommodate extra attributes and methods, while retaining as much xarray functionality as possible, but avoiding reimplementing any of the API. This might not be possible, but ideally I want to make a ```python bd = BoutDataset('/path/to/data') ds = bd.data # access the wrapped xarray dataset extra_data = bd.extra_data # access the BOUT-specific data bd.isel(time=-1) # use xarray dataset methods bd2 = BoutDataset('/path/to/other/data') concatenated_bd = xr.concat([bd, bd2]) # apply top-level xarray functions to the data bd.plot_tokamak() # methods implementing bout-specific functionality ``` Problems with my current approachI have read the documentation about extending xarray, and the issue threads about subclassing Datasets (#706) and accessors (#1080), but I wanted to check that what I'm doing is the recommended approach. Right now I'm trying to do something like ```python @xr.register_dataset_accessor('bout') class BoutDataset: def init(self, path): self.data = collect_data(path) # collect all my numerical data from output files self.extra_data = read_extra_data(path) # collect extra data about the simulation
``` which works in the sense that I can do ```python bd = BoutDataset('/path/to/data') ds = bd.bout.data # access the wrapped xarray dataset extra_data = bd.bout.extra_data # access the BOUT-specific data bd.bout.plot_tokamak() # methods implementing bout-specific functionality ``` but not so well with ```python bd.isel(time=-1) # AttributeError: 'BoutDataset' object has no attribute 'isel' bd.bout.data.isel(time=-1) # have to do this instead, but this returns an xr.Dataset not a BoutDataset concatenated_bd = xr.concat([bd1, bd2]) # TypeError: can only concatenate xarray Dataset and DataArray objects, got <class 'BoutDataset'> concatenated_ds = xr.concat([bd1.bout.data, bd2.bout.data]) # again have to do this instead, which again returns an xr.Dataset not a BoutDataset ``` If I have to reimplement the APl for methods like There aren't very many top-level xarray functions so reimplementing them would be okay, but there are loads of Dataset methods. However I think I know how I want my Is it possible to do something like:
"if calling an Thanks in advance, apologies if this is either impossible or relatively trivial, I just thought other xarray users might have the same questions. |
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