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id node_id number title user state locked assignee milestone comments created_at updated_at ▲ closed_at author_association active_lock_reason draft pull_request body reactions performed_via_github_app state_reason repo type
2099550299 I_kwDOAMm_X859JJhb 8666 Error unstacking array API compliant class TomNicholas 35968931 closed 0     0 2024-01-25T04:35:09Z 2024-01-26T16:06:02Z 2024-01-26T16:06:02Z MEMBER      

What happened?

Unstacking fails for array types that strictly follow the array API standard.

What did you expect to happen?

This obviously works fine with a normal numpy array.

Minimal Complete Verifiable Example

```Python import numpy.array_api as nxp

arr = nxp.asarray([[1, 2, 3], [4, 5, 6]], dtype=np.dtype('float32'))

da = xr.DataArray( arr, coords=[("x", ["a", "b"]), ("y", [0, 1, 2])], ) da stacked = da.stack(z=("x", "y")) stacked.indexes["z"] stacked.unstack()


AttributeError Traceback (most recent call last) Cell In[65], line 8 6 stacked = da.stack(z=("x", "y")) 7 stacked.indexes["z"] ----> 8 roundtripped = stacked.unstack() 9 arr.identical(roundtripped)

File ~/Documents/Work/Code/xarray/xarray/util/deprecation_helpers.py:115, in _deprecate_positional_args.<locals>._decorator.<locals>.inner(args, kwargs) 111 kwargs.update({name: arg for name, arg in zip_args}) 113 return func(args[:-n_extra_args], kwargs) --> 115 return func(*args, kwargs)

File ~/Documents/Work/Code/xarray/xarray/core/dataarray.py:2913, in DataArray.unstack(self, dim, fill_value, sparse) 2851 @_deprecate_positional_args("v2023.10.0") 2852 def unstack( 2853 self, (...) 2857 sparse: bool = False, 2858 ) -> Self: 2859 """ 2860 Unstack existing dimensions corresponding to MultiIndexes into 2861 multiple new dimensions. (...) 2911 DataArray.stack 2912 """ -> 2913 ds = self._to_temp_dataset().unstack(dim, fill_value=fill_value, sparse=sparse) 2914 return self._from_temp_dataset(ds)

File ~/Documents/Work/Code/xarray/xarray/util/deprecation_helpers.py:115, in _deprecate_positional_args.<locals>._decorator.<locals>.inner(args, kwargs) 111 kwargs.update({name: arg for name, arg in zip_args}) 113 return func(args[:-n_extra_args], kwargs) --> 115 return func(*args, kwargs)

File ~/Documents/Work/Code/xarray/xarray/core/dataset.py:5581, in Dataset.unstack(self, dim, fill_value, sparse) 5579 for d in dims: 5580 if needs_full_reindex: -> 5581 result = result._unstack_full_reindex( 5582 d, stacked_indexes[d], fill_value, sparse 5583 ) 5584 else: 5585 result = result._unstack_once(d, stacked_indexes[d], fill_value, sparse)

File ~/Documents/Work/Code/xarray/xarray/core/dataset.py:5474, in Dataset._unstack_full_reindex(self, dim, index_and_vars, fill_value, sparse) 5472 if name not in index_vars: 5473 if dim in var.dims: -> 5474 variables[name] = var.unstack({dim: new_dim_sizes}) 5475 else: 5476 variables[name] = var

File ~/Documents/Work/Code/xarray/xarray/core/variable.py:1684, in Variable.unstack(self, dimensions, **dimensions_kwargs) 1682 result = self 1683 for old_dim, dims in dimensions.items(): -> 1684 result = result._unstack_once_full(dims, old_dim) 1685 return result

File ~/Documents/Work/Code/xarray/xarray/core/variable.py:1574, in Variable._unstack_once_full(self, dim, old_dim) 1571 reordered = self.transpose(*dim_order) 1573 new_shape = reordered.shape[: len(other_dims)] + new_dim_sizes -> 1574 new_data = reordered.data.reshape(new_shape) 1575 new_dims = reordered.dims[: len(other_dims)] + new_dim_names 1577 return type(self)( 1578 new_dims, new_data, self._attrs, self._encoding, fastpath=True 1579 )

AttributeError: 'Array' object has no attribute 'reshape' ```

MVCE confirmation

  • [X] Minimal example — the example is as focused as reasonably possible to demonstrate the underlying issue in xarray.
  • [X] Complete example — the example is self-contained, including all data and the text of any traceback.
  • [X] Verifiable example — the example copy & pastes into an IPython prompt or Binder notebook, returning the result.
  • [X] New issue — a search of GitHub Issues suggests this is not a duplicate.
  • [X] Recent environment — the issue occurs with the latest version of xarray and its dependencies.

Relevant log output

No response

Anything else we need to know?

It fails on the arr.reshape call, because the array API standard has reshape be a function, not a method.

We do in fact have an array API-compatible version of reshape defined in duck_array_ops.py, it just apparently isn't yet used everywhere we call reshape.

https://github.com/pydata/xarray/blob/037a39e249e5387bc15de447c57bfd559fd5a574/xarray/core/duck_array_ops.py#L363

Environment

main branch of xarray, numpy 1.26.0

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  completed xarray 13221727 issue
1426383543 I_kwDOAMm_X85VBOK3 7232 ds.Coarsen.construct demotes non-dimensional coordinates to variables TomNicholas 35968931 closed 0     0 2022-10-27T23:39:32Z 2022-10-28T17:46:51Z 2022-10-28T17:46:51Z MEMBER      

What happened?

ds.Coarsen.construct demotes non-dimensional coordinates to variables

What did you expect to happen?

All variables that were coordinates before the coarsen.construct stay as coordinates afterwards.

Minimal Complete Verifiable Example

```Python In [3]: da = xr.DataArray(np.arange(24), dims=["time"]) ...: da = da.assign_coords(day=365 * da) ...: ds = da.to_dataset(name="T")

In [4]: ds Out[4]: <xarray.Dataset> Dimensions: (time: 24) Coordinates: day (time) int64 0 365 730 1095 1460 1825 ... 6935 7300 7665 8030 8395 Dimensions without coordinates: time Data variables: T (time) int64 0 1 2 3 4 5 6 7 8 9 ... 14 15 16 17 18 19 20 21 22 23

In [5]: ds.coarsen(time=12).construct(time=("year", "month")) Out[5]: <xarray.Dataset> Dimensions: (year: 2, month: 12) Coordinates: day (year, month) int64 0 365 730 1095 1460 ... 7300 7665 8030 8395 Dimensions without coordinates: year, month Data variables: T (year, month) int64 0 1 2 3 4 5 6 7 8 ... 16 17 18 19 20 21 22 23 ```

MVCE confirmation

  • [X] Minimal example — the example is as focused as reasonably possible to demonstrate the underlying issue in xarray.
  • [X] Complete example — the example is self-contained, including all data and the text of any traceback.
  • [X] Verifiable example — the example copy & pastes into an IPython prompt or Binder notebook, returning the result.
  • [X] New issue — a search of GitHub Issues suggests this is not a duplicate.

Relevant log output

No response

Anything else we need to know?

No response

Environment

main

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  completed xarray 13221727 issue
547523622 MDU6SXNzdWU1NDc1MjM2MjI= 3676 Merging dataArray into dataset using dataset method fails TomNicholas 35968931 closed 0     0 2020-01-09T14:46:49Z 2020-01-12T13:04:02Z 2020-01-12T13:04:02Z MEMBER      

While it's possible to merge a dataset and a dataarray object using the top-level merge() function, if you try the same thing with the ds.merge() method it fails.

```python import xarray as xr

ds = xr.Dataset({'a': 0}) da = xr.DataArray(1, name='b')

expected = xr.merge([ds, da]) # works fine print(expected)

ds.merge(da) # fails ```

Output: ``` <xarray.Dataset> Dimensions: () Data variables: a int64 0 b int64 1

Traceback (most recent call last): File "mwe.py", line 6, in <module> actual = ds.merge(da) File "/home/tegn500/Documents/Work/Code/xarray/xarray/core/dataset.py", line 3591, in merge fill_value=fill_value, File "/home/tegn500/Documents/Work/Code/xarray/xarray/core/merge.py", line 835, in dataset_merge_method objs, compat, join, priority_arg=priority_arg, fill_value=fill_value File "/home/tegn500/Documents/Work/Code/xarray/xarray/core/merge.py", line 548, in merge_core coerced = coerce_pandas_values(objects) File "/home/tegn500/Documents/Work/Code/xarray/xarray/core/merge.py", line 394, in coerce_pandas_values for k, v in obj.items(): File "/home/tegn500/Documents/Work/Code/xarray/xarray/core/common.py", line 233, in getattr "{!r} object has no attribute {!r}".format(type(self).name, name) AttributeError: 'DataArray' object has no attribute 'items' ```

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  completed xarray 13221727 issue
463096652 MDU6SXNzdWU0NjMwOTY2NTI= 3073 Accidentally left a print statement TomNicholas 35968931 closed 0     0 2019-07-02T08:38:40Z 2019-07-02T14:16:43Z 2019-07-02T14:16:43Z MEMBER      

Somehow a rogue debugging print statement managed to sneak through to master in #2616!

Line 121 of combine.py https://github.com/pydata/xarray/blob/e2c2264833ce7e861bbb930be44356e1510e13c3/xarray/core/combine.py#L121 should be deleted.

@shoyer @dcherian

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  completed xarray 13221727 issue

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