issues: 869721207
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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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869721207 | MDU6SXNzdWU4Njk3MjEyMDc= | 5226 | Attributes encoding compatibility between backends | 4160723 | open | 0 | 1 | 2021-04-28T09:11:19Z | 2021-04-28T15:42:42Z | MEMBER | What happened: Let's create an Zarr dataset with some "less common" dtype and fill value, open it with Xarray and save the dataset as NetCDF: ```python import xarray as xr import zarr g = zarr.group() g.create('arr', shape=3, fill_value='z', dtype='<U1') g['arr'].attrs['_ARRAY_DIMENSIONS'] = ('dim_1') -- without masking fill valuesds = xr.open_zarr(g.store, mask_and_scale=False) ds.arr.attrs # returns {'_FillValue': 'z'} error: netCDF4 does not yet support setting a fill value for variable-length stringsds.to_netcdf('test.nc') -- with masking fill valuesds2 = xr.open_zarr(g.store, mask_and_scale=True) returns a dict that includes item _FillValue': 'z'ds2.arr.encoding same error than aboveds2.to_netcdf('out2.nc') ``` What you expected to happen: Seamless conversion (read/write) from one backend to another. Is there anything we could do to improve the case shown here above, and maybe other cases like the one described in #5223? Environment: Output of <tt>xr.show_versions()</tt>INSTALLED VERSIONS ------------------ commit: None libhdf5: None libnetcdf: None xarray: 0.17.0 pandas: 1.0.3 numpy: 1.18.1 scipy: 1.3.1 netCDF4: None pydap: None h5netcdf: None h5py: None Nio: None zarr: 2.8.1 cftime: None nc_time_axis: None PseudoNetCDF: None rasterio: None cfgrib: None iris: None bottleneck: None dask: 2.11.0 distributed: 2.14.0 matplotlib: 3.1.1 cartopy: None seaborn: None numbagg: None pint: None setuptools: 46.1.3.post20200325 pip: 19.2.3 conda: None pytest: 5.4.1 IPython: 7.13.0 sphinx: None |
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13221727 | issue |