issues: 295621576
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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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295621576 | MDU6SXNzdWUyOTU2MjE1NzY= | 1897 | Vectorized indexing with cache=False | 2443309 | closed | 0 | 5 | 2018-02-08T18:38:18Z | 2018-03-06T22:00:57Z | 2018-03-06T22:00:57Z | MEMBER | Code Sample, a copy-pastable example if possible```python import numpy as np import xarray as xr n_times = 4; n_lats = 10; n_lons = 15 n_points = 4 ds = xr.Dataset({'test_var': (['time', 'latitude', 'longitude'], np.random.random((n_times, n_lats, n_lons)))}) ds.to_netcdf('test.nc') rand_lons = xr.Variable('points', np.random.randint(0, high=n_lons, size=n_points)) rand_lats = xr.Variable('points', np.random.randint(0, high=n_lats, size=n_points)) ds = xr.open_dataset('test.nc', cache=False)
points = ds['test_var'][:, rand_lats, rand_lons]
NotImplementedError Traceback (most recent call last) <ipython-input-7-f16e4cae9456> in <module>() 12 13 ds = xr.open_dataset('test.nc', cache=False) ---> 14 points = ds['test_var'][:, rand_lats, rand_lons] ~/anaconda/envs/pangeo/lib/python3.6/site-packages/xarray/core/dataarray.py in getitem(self, key) 478 else: 479 # xarray-style array indexing --> 480 return self.isel(**self._item_key_to_dict(key)) 481 482 def setitem(self, key, value): ~/anaconda/envs/pangeo/lib/python3.6/site-packages/xarray/core/dataarray.py in isel(self, drop, indexers) 759 DataArray.sel 760 """ --> 761 ds = self._to_temp_dataset().isel(drop=drop, indexers) 762 return self._from_temp_dataset(ds) 763 ~/anaconda/envs/pangeo/lib/python3.6/site-packages/xarray/core/dataset.py in isel(self, drop, indexers) 1390 for name, var in iteritems(self._variables): 1391 var_indexers = {k: v for k, v in indexers_list if k in var.dims} -> 1392 new_var = var.isel(var_indexers) 1393 if not (drop and name in var_indexers): 1394 variables[name] = new_var ~/anaconda/envs/pangeo/lib/python3.6/site-packages/xarray/core/variable.py in isel(self, **indexers) 851 if dim in indexers: 852 key[i] = indexers[dim] --> 853 return self[tuple(key)] 854 855 def squeeze(self, dim=None): ~/anaconda/envs/pangeo/lib/python3.6/site-packages/xarray/core/variable.py in getitem(self, key) 620 """ 621 dims, indexer, new_order = self._broadcast_indexes(key) --> 622 data = as_indexable(self._data)[indexer] 623 if new_order: 624 data = np.moveaxis(data, range(len(new_order)), new_order) ~/anaconda/envs/pangeo/lib/python3.6/site-packages/xarray/core/indexing.py in getitem(self, key) 554 555 def getitem(self, key): --> 556 return type(self)(_wrap_numpy_scalars(self.array[key])) 557 558 def setitem(self, key, value): ~/anaconda/envs/pangeo/lib/python3.6/site-packages/xarray/core/indexing.py in getitem(self, indexer) 521 522 def getitem(self, indexer): --> 523 return type(self)(self.array, self._updated_key(indexer)) 524 525 def setitem(self, key, value): ~/anaconda/envs/pangeo/lib/python3.6/site-packages/xarray/core/indexing.py in _updated_key(self, new_key) 491 'Vectorized indexing for {} is not implemented. Load your ' 492 'data first with .load() or .compute(), or disable caching by ' --> 493 'setting cache=False in open_dataset.'.format(type(self))) 494 495 iter_new_key = iter(expanded_indexer(new_key.tuple, self.ndim)) NotImplementedError: Vectorized indexing for <class 'xarray.core.indexing.LazilyIndexedArray'> is not implemented. Load your data first with .load() or .compute(), or disable caching by setting cache=False in open_dataset. ``` Problem descriptionRaising a Expected OutputIdeally, we can get the same behavior as: ```python ds = xr.open_dataset('test2.nc', cache=False).load() points = ds['test_var'][:, rand_lats, rand_lons] <xarray.DataArray 'test_var' (time: 4, points: 4)> array([[0.939469, 0.406885, 0.939469, 0.759075], [0.470116, 0.585546, 0.470116, 0.37833 ], [0.274321, 0.648218, 0.274321, 0.383391], [0.754121, 0.078878, 0.754121, 0.903788]]) Dimensions without coordinates: time, points ``` without needing to use Output of
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completed | 13221727 | issue |