issues: 2059035193
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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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2059035193 | I_kwDOAMm_X856umI5 | 8574 | NetCDF writing error | 16617720 | closed | 0 | 5 | 2023-12-29T03:43:10Z | 2023-12-29T04:26:39Z | 2023-12-29T04:07:56Z | NONE | What happened?Was working on writing a to_netcdf dataset and came across the following issue that does not allow netCDF writing - doesn't seem to matter what dataset is used, whether compute is turned on or off, or engine choice which suggests something of a bug. Reproducible example: ds = xr.tutorial.load_dataset("air_temperature") ds.to_netcdf('testing.nc') Error Response `--------------------------------------------------------------------------- TypeError Traceback (most recent call last) Cell In[7], line 2 1 ds = xr.tutorial.load_dataset("air_temperature") ----> 2 ds.to_netcdf('testing.nc') File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/site-packages/xarray/core/dataset.py:2310, in Dataset.to_netcdf(self, path, mode, format, group, engine, encoding, unlimited_dims, compute, invalid_netcdf) 2307 encoding = {} 2308 from xarray.backends.api import to_netcdf -> 2310 return to_netcdf( # type: ignore # mypy cannot resolve the overloads:( 2311 self, 2312 path, 2313 mode=mode, 2314 format=format, 2315 group=group, 2316 engine=engine, 2317 encoding=encoding, 2318 unlimited_dims=unlimited_dims, 2319 compute=compute, 2320 multifile=False, 2321 invalid_netcdf=invalid_netcdf, 2322 ) File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/site-packages/xarray/backends/api.py:1279, in to_netcdf(dataset, path_or_file, mode, format, group, engine, encoding, unlimited_dims, compute, multifile, invalid_netcdf) 1276 format = format.upper() # type: ignore[assignment] 1278 # handle scheduler specific logic -> 1279 scheduler = _get_scheduler() 1280 have_chunks = any(v.chunks is not None for v in dataset.variables.values()) 1282 autoclose = have_chunks and scheduler in ["distributed", "multiprocessing"] File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/site-packages/xarray/backends/locks.py:86, in _get_scheduler(get, collection) 83 import dask 84 from dask.base import get_scheduler # noqa: F401 ---> 86 actual_get = get_scheduler(get, collection) 87 except ImportError: 88 return None File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/site-packages/dask/base.py:1440, in get_scheduler(get, scheduler, collections, cls) 1437 raise ValueError(get_err_msg) 1439 try: -> 1440 from distributed import get_client 1442 return get_client().get 1443 except (ImportError, ValueError): File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/site-packages/distributed/init.py:23 20 from dask.config import config # type: ignore 22 from distributed._version import get_versions ---> 23 from distributed.actor import Actor, ActorFuture, BaseActorFuture 24 from distributed.client import ( 25 Client, 26 CompatibleExecutor, (...) 35 wait, 36 ) 37 from distributed.core import Status, connect, rpc File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/site-packages/distributed/actor.py:13 9 from typing import Generic, Literal, NoReturn, TypeVar 11 from tornado.ioloop import IOLoop ---> 13 from distributed.client import Future 14 from distributed.protocol import to_serialize 15 from distributed.utils import LateLoopEvent, iscoroutinefunction, sync, thread_state File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/site-packages/distributed/client.py:117 94 from distributed.utils import ( 95 CancelledError, 96 LoopRunner, (...) 107 thread_state, 108 ) 109 from distributed.utils_comm import ( 110 WrappedKey, 111 gather_from_workers, (...) 115 unpack_remotedata, 116 ) --> 117 from distributed.worker import get_client, get_worker, secede 119 logger = logging.getLogger(name) 121 _global_clients: weakref.WeakValueDictionary[ 122 int, Client 123 ] = weakref.WeakValueDictionary() File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/site-packages/distributed/worker.py:120 118 from distributed.utils_perf import disable_gc_diagnosis, enable_gc_diagnosis 119 from distributed.versions import get_versions --> 120 from distributed.worker_memory import ( 121 DeprecatedMemoryManagerAttribute, 122 DeprecatedMemoryMonitor, 123 WorkerDataParameter, 124 WorkerMemoryManager, 125 ) 126 from distributed.worker_state_machine import ( 127 AcquireReplicasEvent, 128 BaseWorker, (...) 152 WorkerState, 153 ) 155 if TYPE_CHECKING: 156 # FIXME import from typing (needs Python >=3.10) File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/site-packages/distributed/worker_memory.py:56 53 from distributed.nanny import Nanny 54 from distributed.worker import Worker ---> 56 WorkerDataParameter: TypeAlias = Union[ 57 # pre-initialized 58 MutableMapping[Key, object], 59 # constructor 60 Callable[[], MutableMapping[Key, object]], 61 # constructor, passed worker.local_directory 62 Callable[[str], MutableMapping[Key, object]], 63 # (constructor, kwargs to constructor) 64 tuple[Callable[..., MutableMapping[Key, object]], dict[str, Any]], 65 # initialize internally 66 None, 67 ] 69 worker_logger = logging.getLogger("distributed.worker.memory") 70 worker_logger.addFilter(RateLimiterFilter(r"Unmanaged memory use is high")) File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/typing.py:243, in _tp_cache.<locals>.inner(args, kwds) 241 except TypeError: 242 pass # All real errors (not unhashable args) are raised below. --> 243 return func(args, **kwds) File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/typing.py:316, in _SpecialForm.getitem(self, parameters) 314 @_tp_cache 315 def getitem(self, parameters): --> 316 return self._getitem(self, parameters) File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/typing.py:421, in Union(self, parameters) 419 msg = "Union[arg, ...]: each arg must be a type." 420 parameters = tuple(_type_check(p, msg) for p in parameters) --> 421 parameters = _remove_dups_flatten(parameters) 422 if len(parameters) == 1: 423 return parameters[0] File /storage/local/raid/e1/z3a/personal/allen4jt/environments/conda/p39_nov23/lib/python3.9/typing.py:215, in _remove_dups_flatten(parameters) 213 params.append(p) 214 # Weed out strict duplicates, preserving the first of each occurrence. --> 215 all_params = set(params) 216 if len(all_params) < len(params): 217 new_params = [] TypeError: unhashable type: 'list'` What did you expect to happen?No response Minimal Complete Verifiable ExampleNo response MVCE confirmation
Relevant log output
Anything else we need to know?No response Environment
INSTALLED VERSIONS
------------------
commit: None
python: 3.9.0 (default, Nov 15 2020, 14:28:56)
[GCC 7.3.0]
python-bits: 64
OS: Linux
OS-release: 5.15.0-86-generic
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_US.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: 1.12.2
libnetcdf: 4.9.3-development
xarray: 2023.12.0
pandas: 2.1.3
numpy: 1.26.2
scipy: 1.11.4
netCDF4: 1.6.5
pydap: None
h5netcdf: None
h5py: None
Nio: None
zarr: 2.16.1
cftime: 1.6.3
nc_time_axis: None
iris: None
bottleneck: None
dask: 2023.11.0
distributed: None
matplotlib: 3.8.2
cartopy: 0.22.0
seaborn: 0.13.0
numbagg: None
fsspec: 2023.10.0
cupy: None
pint: 0.22
sparse: 0.14.0
flox: None
numpy_groupies: None
setuptools: 68.0.0
pip: 23.3.1
conda: None
pytest: None
mypy: None
IPython: 8.18.0
sphinx: None
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completed | 13221727 | issue |