issues: 1986324822
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id | node_id | number | title | user | state | locked | assignee | milestone | comments | created_at | updated_at | closed_at | author_association | active_lock_reason | draft | pull_request | body | reactions | performed_via_github_app | state_reason | repo | type |
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1986324822 | I_kwDOAMm_X852ZOlW | 8436 | align fails when more than one xindex is set | 10194086 | closed | 0 | 2 | 2023-11-09T20:07:52Z | 2023-11-10T12:53:49Z | 2023-11-10T12:53:49Z | MEMBER | What happened?I tried a DataArray with more than one dimension coordinate. Unfortunately What did you expect to happen?No response Minimal Complete Verifiable Example```Python import numpy as np import xarray as xr data = np.arange(12).reshape(3, 4) y = [10, 20, 30] s = ["a", "b", "c"] x = [1, 2, 3, 4] da = xr.DataArray(data, dims=("y", "x"), coords={"x": x, "y": y, "s": ("y", s)}) da = da.set_xindex("s") xr.align(da, da.y) # errors da + da # errors da + da.x # errors ``` MVCE confirmation
Relevant log output```PythonValueError Traceback (most recent call last) /home/mathause/code/mesmer/devel/prepare_for_surfer.ipynb Cell 28 line 1 12 da = xr.DataArray(data, dims=("y", "x"), coords={"x": x, "y": y, "s": ("y", s)}) 13 da = da.set_xindex("s") ---> 15 xr.align(da, da.y) # errors 17 da + da.x # errors File ~/.conda/envs/mesmer_dev/lib/python3.9/site-packages/xarray/core/alignment.py:888, in align(join, copy, indexes, exclude, fill_value, *objects) 692 """ 693 Given any number of Dataset and/or DataArray objects, returns new 694 objects with aligned indexes and dimension sizes. ref='~/.conda/envs/mesmer_dev/lib/python3.9/site-packages/xarray/core/alignment.py:0'>0;32m (...) 878 879 """ 880 aligner = Aligner( 881 objects, 882 join=join, ref='~/.conda/envs/mesmer_dev/lib/python3.9/site-packages/xarray/core/alignment.py:0'>0;32m (...) 886 fill_value=fill_value, 887 ) --> 888 aligner.align() 889 return aligner.results File ~/.conda/envs/mesmer_dev/lib/python3.9/site-packages/xarray/core/alignment.py:573, in Aligner.align(self) 571 self.find_matching_indexes() 572 self.find_matching_unindexed_dims() --> 573 self.assert_no_index_conflict() 574 self.align_indexes() 575 self.assert_unindexed_dim_sizes_equal() File ~/.conda/envs/mesmer_dev/lib/python3.9/site-packages/xarray/core/alignment.py:318, in Aligner.assert_no_index_conflict(self) 314 if dup: 315 items_msg = ", ".join( 316 f"{k!r} ({v} conflicting indexes)" for k, v in dup.items() 317 ) --> 318 raise ValueError( 319 "cannot re-index or align objects with conflicting indexes found for " 320 f"the following {msg}: {items_msg}\n" 321 "Conflicting indexes may occur when\n" 322 "- they relate to different sets of coordinate and/or dimension names\n" 323 "- they don't have the same type\n" 324 "- they may be used to reindex data along common dimensions" 325 ) ValueError: cannot re-index or align objects with conflicting indexes found for the following dimensions: 'y' (2 conflicting indexes) Conflicting indexes may occur when - they relate to different sets of coordinate and/or dimension names - they don't have the same type - they may be used to reindex data along common dimensions ``` Anything else we need to know?No response Environment
INSTALLED VERSIONS
------------------
commit: feba6984aa914327408fee3c286dae15969d2a2f
python: 3.10.12 | packaged by conda-forge | (main, Jun 23 2023, 22:40:32) [GCC 12.3.0]
python-bits: 64
OS: Linux
OS-release: 6.2.0-36-generic
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_US.UTF-8
LOCALE: ('en_US', 'UTF-8')
libhdf5: 1.14.2
libnetcdf: 4.9.2
xarray: 2023.9.1.dev8+gf6d69a1f
pandas: 2.1.1
numpy: 1.24.4
scipy: 1.11.3
netCDF4: 1.6.4
pydap: installed
h5netcdf: 1.2.0
h5py: 3.9.0
Nio: None
zarr: 2.16.1
cftime: 1.6.2
nc_time_axis: 1.4.1
PseudoNetCDF: 3.2.2
iris: 3.7.0
bottleneck: 1.3.7
dask: 2023.9.2
distributed: None
matplotlib: 3.8.0
cartopy: 0.22.0
seaborn: 0.12.2
numbagg: 0.2.2
fsspec: 2023.9.2
cupy: None
pint: 0.20.1
sparse: 0.14.0
flox: 0.7.2
numpy_groupies: 0.10.1
setuptools: 68.2.2
pip: 23.2.1
conda: None
pytest: 7.4.2
mypy: 1.5.1
IPython: 8.15.0
sphinx: None
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completed | 13221727 | issue |